CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BACCN (Elongation factor Tu OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 98/145 (67.59%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LD+A AGDN+G LLRGV + DIQRG VLAKPG++  H KF A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG +        E ++MVMPGD ++M VELI PVA E+G +F+IREGG+TVGAGV+ SIIE
Sbjct:  256 TVTGVEMFRKLLDQAEAGDNIGALLRGVAREDIQRGQVLAKPGSVKAHAKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGII-----QLPEGTEMVMPGDNVEMTVELIAPVAVEEGTKFSIREGGRTVGAGVVASIIE 395          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ACTPJ (Elongation factor Tu OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+NVG LLRG ++ +I+RG VLAKPGTITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A ++G+RFAIREGG+TVGAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVLAKPGTITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ACTP2 (Elongation factor Tu OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+NVG LLRG ++ +I+RG VLAKPGTITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A ++G+RFAIREGG+TVGAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVLAKPGTITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PELLD (Elongation factor Tu OS=Pelodictyon luteolum (strain DSM 273) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.223e-50
Identity = 96/144 (66.67%), Postives = 113/144 (78.47%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMFQK LDE  AGDN GLLLRGV K +++RGMV+AKPGTI PHTKF A VY+LKKEEGGRH+PFF  YRPQFY RTTDVTG V+       E  +MVMPGD + + VELI P+A ++G+RFAIREGG+TVGAG +  I E
Sbjct:  255 VTGIEMFQKLLDEGQAGDNAGLLLRGVDKTELERGMVIAKPGTIKPHTKFKAEVYILKKEEGGRHTPFFTNYRPQFYFRTTDVTGAVT-----LPEGVEMVMPGDNLSVDVELIAPIAMDEGLRFAIREGGRTVGAGSVTKISE 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NITMU (Elongation factor Tu OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.223e-50
Identity = 93/143 (65.03%), Postives = 114/143 (79.72%), Query Frame = 1
Query:   13 TGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAKPGTITPHTKF A +YVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +    ++MVMPGD + + V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  259 TGVEMFRKLLDQGQAGDNVGVLLRGTKREEVERGQVLAKPGTITPHTKFTAEIYVLSKEEGGRHTPFFQGYRPQFYFRTTDVTGAI-----ELPAGTEMVMPGDNVSVTVNLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_FRAP2 (Elongation factor Tu OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.223e-50
Identity = 95/145 (65.52%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LD+  AGDNVG+L+RG+++ D++RG VL KPG+I PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTD+TG V     +  E  +MVMPGD IKM + LI P+A ++G+RFAIREGG+TVGAGV+  IIE
Sbjct:  255 TVTGVEMFRKLLDKGEAGDNVGILVRGLKRDDVERGQVLCKPGSIKPHTKFEAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNIKMTITLINPIAMDEGLRFAIREGGRTVGAGVVAKIIE 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CAMHC (Elongation factor Tu OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.223e-50
Identity = 97/144 (67.36%), Postives = 114/144 (79.17%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            TVTGVEMF+K LDE  AGDNVG+LLRG  K D++RGMVLAKP +ITPHTKF A VY+L KEEGGRH+PFF  YRPQFY+RTTDVTG +        E ++MVMPGD +K+ VELI P+A EQG RFAIREGG TVG+GV+  I+
Sbjct:  260 TVTGVEMFRKELDEGEAGDNVGVLLRGTAKEDVERGMVLAKPKSITPHTKFEAEVYILTKEEGGRHTPFFNNYRPQFYVRTTDVTGSI-----QLPEGTEMVMPGDNVKITVELIHPIALEQGTRFAIREGGHTVGSGVVSKIL 398          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTUL_VIBVU (Putative elongation factor Tu-like protein OS=Vibrio vulnificus GN=VV1_1204 PE=5 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.223e-50
Identity = 96/145 (66.21%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AG+NVG LLRG ++ +++RG VLAKPG+ITPHTKF + VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +S       E  +MVMPGD I+MVVELI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  164 TCTGVEMFRKLLDEGRAGENVGALLRGTKRDEVERGQVLAKPGSITPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGDIS-----LPEGVEMVMPGDNIQMVVELISPIAMDEGLRFAIREGGRTVGAGVVAKIFE 303          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU2_VIBVY (Elongation factor Tu 2 OS=Vibrio vulnificus (strain YJ016) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 7.223e-50
Identity = 96/145 (66.21%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AG+NVG LLRG ++ +++RG VLAKPG+ITPHTKF + VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +S       E  +MVMPGD I+MVVELI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  255 TCTGVEMFRKLLDEGRAGENVGALLRGTKRDEVERGQVLAKPGSITPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGDIS-----LPEGVEMVMPGDNIQMVVELISPIAMDEGLRFAIREGGRTVGAGVVAKIFE 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU2_PASMU (Elongation factor Tu-B OS=Pasteurella multocida GN=tufB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.223e-50
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+NVG LLRG ++ +I+RG VLAKPG+ITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BACCN5.530e-5067.59Elongation factor Tu OS=Bacillus cereus subsp. cyt... [more]
EFTU_ACTPJ5.530e-5066.90Elongation factor Tu OS=Actinobacillus pleuropneum... [more]
EFTU_ACTP25.530e-5066.90Elongation factor Tu OS=Actinobacillus pleuropneum... [more]
EFTU_PELLD7.223e-5066.67Elongation factor Tu OS=Pelodictyon luteolum (stra... [more]
EFTU_NITMU7.223e-5065.03Elongation factor Tu OS=Nitrosospira multiformis (... [more]
EFTU_FRAP27.223e-5065.52Elongation factor Tu OS=Francisella philomiragia s... [more]
EFTU_CAMHC7.223e-5067.36Elongation factor Tu OS=Campylobacter hominis (str... [more]
EFTUL_VIBVU7.223e-5066.21Putative elongation factor Tu-like protein OS=Vibr... [more]
EFTU2_VIBVY7.223e-5066.21Elongation factor Tu 2 OS=Vibrio vulnificus (strai... [more]
EFTU2_PASMU7.223e-5066.90Elongation factor Tu-B OS=Pasteurella multocida GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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