CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU1_PASMU (Elongation factor Tu-A OS=Pasteurella multocida GN=tufA PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.223e-50
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+NVG LLRG ++ +I+RG VLAKPG+ITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_VIBC3 (Elongation factor Tu OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 94/144 (65.28%), Postives = 116/144 (80.56%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            T TGVEMF+K LDE  AG+NVG LLRG ++ +++RG VLAKPG+ITPHTKF + VYVL K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD +KMVV+LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  255 TCTGVEMFRKLLDEGRAGENVGALLRGTKREEVERGQVLAKPGSITPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGSI-----ELPEGVEMVMPGDNVKMVVDLIAPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PSEMY (Elongation factor Tu OS=Pseudomonas mendocina (strain ymp) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 98/145 (67.59%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LDE  AG+N G+LLRG ++ +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD IKMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  258 TCTGVEMFRKLLDEGRAGENCGVLLRGTKRDEVERGQVLAKPGTIKPHTKFEAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSC-----ELPEGVEMVMPGDNIKMVVTLIKPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PSEA6 (Elongation factor Tu OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 95/144 (65.97%), Postives = 115/144 (79.86%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            TVTGVEMF+K LDE  AG+N+G LLRG ++ D++RG VLAKPG+I PHT+F A VYVL K+EGGRH+PFF GYRPQFY RTTDVTG V     +  E  +MVMPGD +K VVELI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  255 TVTGVEMFRKLLDEGRAGENIGALLRGTKREDVERGQVLAKPGSINPHTQFEAEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGAV-----ELPEGVEMVMPGDNLKFVVELIAPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PETMO (Elongation factor Tu OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 98/144 (68.06%), Postives = 114/144 (79.17%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMF+K LDE  AGDNVG LLRG++K +++RG VLA PG+ITPH KF A VYVLKKEEGGRH+PF  GYRPQFY+RT DVTG +    +     ++MVMPGD I M VELI PVA E+GMRFAIREGG+TVGAGV+  IIE
Sbjct:  260 VTGVEMFRKILDEGEAGDNVGCLLRGIEKDEVKRGQVLAAPGSITPHKKFKAEVYVLKKEEGGRHTPFTKGYRPQFYIRTADVTGTLVEFSSG----AEMVMPGDNINMTVELIYPVALEEGMRFAIREGGRTVGAGVVTEIIE 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_MANSM (Elongation factor Tu OS=Mannheimia succiniciproducens (strain MBEL55E) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 96/145 (66.21%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+N+G LLRG ++ +I+RG VLAKPG+ITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_HAES2 (Elongation factor Tu OS=Haemophilus somnus (strain 2336) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 96/145 (66.21%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+N+G LLRG ++ +I+RG VLAKPG+ITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_HAES1 (Elongation factor Tu OS=Haemophilus somnus (strain 129Pt) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 96/145 (66.21%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+N+G LLRG ++ +I+RG VLAKPG+ITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_DEISP (Elongation factor Tu OS=Deinonema sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 97/145 (66.90%), Postives = 114/145 (78.62%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTG+EM +K LD  MAGDNVG+LLRGV + D++RG VLAKPG+I PHTKF A VYVL K+EGGRHS FF GYRPQFY RTTDVTG V     +  E  +MVMPGD I  VVELI P+A E+G+RFAIREGG+TVGAGV+  ++E
Sbjct:  266 TVTGIEMHRKLLDSGMAGDNVGVLLRGVARDDVERGQVLAKPGSIKPHTKFEASVYVLSKDEGGRHSAFFGGYRPQFYFRTTDVTGVV-----ELPEGVEMVMPGDNITFVVELIKPIAMEEGLRFAIREGGRTVGAGVVAKVLE 405          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHRSD (Elongation factor Tu OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 95/145 (65.52%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+N+G LLRG ++ D++RG VLAKPGTITPHT F A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD +KM V LI P+A E G+RFA+REGG+TVGAGV+  I++
Sbjct:  258 TVTGVEMFRKLLDEGRAGENIGALLRGTKRDDVERGQVLAKPGTITPHTVFEAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTC-----ELPEGVEMVMPGDNVKMTVTLIAPIAMEDGLRFAVREGGRTVGAGVVAKIVQ 397          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_PASMU7.223e-5066.90Elongation factor Tu-A OS=Pasteurella multocida GN... [more]
EFTU_VIBC39.433e-5065.28Elongation factor Tu OS=Vibrio cholerae serotype O... [more]
EFTU_PSEMY9.433e-5067.59Elongation factor Tu OS=Pseudomonas mendocina (str... [more]
EFTU_PSEA69.433e-5065.97Elongation factor Tu OS=Pseudoalteromonas atlantic... [more]
EFTU_PETMO9.433e-5068.06Elongation factor Tu OS=Petrotoga mobilis (strain ... [more]
EFTU_MANSM9.433e-5066.21Elongation factor Tu OS=Mannheimia succiniciproduc... [more]
EFTU_HAES29.433e-5066.21Elongation factor Tu OS=Haemophilus somnus (strain... [more]
EFTU_HAES19.433e-5066.21Elongation factor Tu OS=Haemophilus somnus (strain... [more]
EFTU_DEISP9.433e-5066.90Elongation factor Tu OS=Deinonema sp. GN=tuf PE=3 ... [more]
EFTU_CHRSD9.433e-5065.52Elongation factor Tu OS=Chromohalobacter salexigen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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