CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPB (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain BS1) GN=tuf PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 96/144 (66.67%), Postives = 114/144 (79.17%), Query Frame = 1 
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMFQK LD+  AGDN GLL RGV K +I+RGMV+AKPGTITPHTKF A VY+LKKEEGGRH+PFF  YRPQFY RTTDVTG V+       E  +MVMPGD + + VELI+P+A ++ +RFAIREGG+TVGAG +  IIE
Sbjct:  255 VTGIEMFQKILDQGQAGDNAGLLFRGVGKDEIERGMVVAKPGTITPHTKFKAEVYILKKEEGGRHTPFFNNYRPQFYFRTTDVTGAVT-----LPEGVEMVMPGDNLSIEVELIVPIAMDENLRFAIREGGRTVGAGTVTQIIE 393
[Close]
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BURVG (Elongation factor Tu OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BURTA (Elongation factor Tu OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BURS3 (Elongation factor Tu OS=Burkholderia sp. (strain 383) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BURPS (Elongation factor Tu OS=Burkholderia pseudomallei GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BURP6 (Elongation factor Tu OS=Burkholderia pseudomallei (strain 668) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BURP1 (Elongation factor Tu OS=Burkholderia pseudomallei (strain 1710b) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BURP0 (Elongation factor Tu OS=Burkholderia pseudomallei (strain 1106a) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BURMS (Elongation factor Tu OS=Burkholderia mallei (strain SAVP1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BURMA (Elongation factor Tu OS=Burkholderia mallei GN=tuf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 9.433e-50
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1 
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CHLPB9.433e-5066.67Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]
EFTU_BURVG9.433e-5066.90Elongation factor Tu OS=Burkholderia vietnamiensis... [more]
EFTU_BURTA9.433e-5066.90Elongation factor Tu OS=Burkholderia thailandensis... [more]
EFTU_BURS39.433e-5066.90Elongation factor Tu OS=Burkholderia sp. (strain 3... [more]
EFTU_BURPS9.433e-5066.90Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURP69.433e-5066.90Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURP19.433e-5066.90Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURP09.433e-5066.90Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURMS9.433e-5066.90Elongation factor Tu OS=Burkholderia mallei (strai... [more]
EFTU_BURMA9.433e-5066.90Elongation factor Tu OS=Burkholderia mallei GN=tuf... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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