CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PROM4 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9211) GN=tuf PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.206e-58
Identity = 109/145 (75.17%), Postives = 123/145 (84.83%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   D     +MVMPGDRIKM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.206e-58
Identity = 104/147 (70.75%), Postives = 126/147 (85.71%), Query Frame = 1
Query:    1 NFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            N T+TG+EMFQK+LDEA+AGDNVG+L+RG+QK DI+RGMVLA PG+ITPHTKF   VYVL KEEGGRH+PFF+GYRPQFY+RTTDVTG ++   +D    ++MVMPGDRIKM  +LI P+A E+GMRFAIREGG+TVGAGV+  IIE
Sbjct:  262 NTTITGLEMFQKSLDEALAGDNVGILVRGIQKTDIERGMVLAAPGSITPHTKFEGEVYVLTKEEGGRHTPFFSGYRPQFYVRTTDVTGTIAQFTSDDGSTAEMVMPGDRIKMTAQLIHPIAIEKGMRFAIREGGRTVGAGVVSKIIE 408          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PROM2 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9215) GN=tuf PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 9.411e-58
Identity = 108/145 (74.48%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +D     +MVMPGDRIKM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_SYNSC (Elongation factor Tu OS=Synechococcus sp. (strain CC9605) GN=tuf PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.229e-57
Identity = 107/145 (73.79%), Postives = 123/145 (84.83%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   +     +MVMPGD I+M  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  255 TVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGQVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIQMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_SYNR3 (Elongation factor Tu OS=Synechococcus sp. (strain RCC307) GN=tuf PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.229e-57
Identity = 108/145 (74.48%), Postives = 123/145 (84.83%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +      +MVMPGD IKM  ELI PVA EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  255 TVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTDRDGGNVEMVMPGDNIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVTKIIE 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PROMS (Elongation factor Tu OS=Prochlorococcus marinus (strain AS9601) GN=tuf PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.605e-57
Identity = 107/145 (73.79%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +D     +MVMPGDRIKM  ELI PVA EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  255 TVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PROM9 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9312) GN=tuf PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.605e-57
Identity = 107/145 (73.79%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +D     +MVMPGDRIKM  ELI PVA EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  255 TVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PROM0 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9301) GN=tuf PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.605e-57
Identity = 107/145 (73.79%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE MAGDNVGLLLRGVQK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++  +D     +MVMPGDRIKM  ELI PVA EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  255 TVTGVEMFRKLLDEGMAGDNVGLLLRGVQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_SYNPX (Elongation factor Tu OS=Synechococcus sp. (strain WH8102) GN=tuf PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.097e-57
Identity = 107/145 (73.79%), Postives = 122/145 (84.14%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K L+E MAGDN GLLLRG+QK DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   D     +MVMPGDRIKM  ELI PVA E GMRFAIREGG+T+GAGV+  IIE
Sbjct:  255 TVTGVEMFRKLLEEGMAGDNCGLLLRGIQKEDIERGMVLVKPGSITPHTKFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSAVEMVMPGDRIKMTGELICPVAMENGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PROMA (Elongation factor Tu OS=Prochlorococcus marinus GN=tuf PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.738e-57
Identity = 107/145 (73.79%), Postives = 123/145 (84.83%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE MAGDNVGLLLRG+QK DI+RGMVL K G+ITPHT+F   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   D     +MVMPGDRIKM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  255 TVTGVEMFRKLLDEGMAGDNVGLLLRGIQKEDIERGMVLVKKGSITPHTQFEGEVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTADDGSSVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PROM47.206e-5875.17Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_GUITH7.206e-5870.75Elongation factor Tu, chloroplastic OS=Guillardia ... [more]
EFTU_PROM29.411e-5874.48Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_SYNSC1.229e-5773.79Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNR31.229e-5774.48Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_PROMS1.605e-5773.79Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM91.605e-5773.79Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM01.605e-5773.79Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_SYNPX2.097e-5773.79Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_PROMA2.738e-5773.79Elongation factor Tu OS=Prochlorococcus marinus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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