CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PARDP (Elongation factor Tu OS=Paracoccus denitrificans (strain Pd 1222) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.967e-47
Identity = 91/145 (62.76%), Postives = 112/145 (77.24%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T TGVEMF+K LD   AGDN+G LLRGV++  ++RG VLAKPG++TPHT+F A  Y+L KEEGGRH+PFFA YRPQFY RTTDVTG V        E ++MVMPGD +K  VELI P+A E+ +RFAIREGG+TVGAGV+  I++
Sbjct:  252 TCTGVEMFRKLLDRGEAGDNIGALLRGVERDGVERGQVLAKPGSVTPHTEFEAEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVK-----LPEGTEMVMPGDNLKFEVELIAPIAMEEKLRFAIREGGRTVGAGVVSKILK 391          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NITWN (Elongation factor Tu OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=tuf PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.967e-47
Identity = 91/145 (62.76%), Postives = 111/145 (76.55%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LD+  AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V          ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  257 TVTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPAGTEMVMPGDNVAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NITHX (Elongation factor Tu OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=tuf PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.967e-47
Identity = 91/145 (62.76%), Postives = 111/145 (76.55%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LD+  AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V          ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  257 TVTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPAGTEMVMPGDNVAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ERYLH (Elongation factor Tu OS=Erythrobacter litoralis (strain HTCC2594) GN=tuf PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.967e-47
Identity = 90/143 (62.94%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 435
            TVTGVEMF+K LD   AGDN+G L+RGV + D++RG VLAKPG++TPHT+F A VYVL K+EGGRH+PFFA YRPQFY RTTDVTG V        E ++MVMPGD + + V+LI P+A ++G+RFAIREGG+TVG+GV+  I
Sbjct:  257 TVTGVEMFRKLLDRGEAGDNIGALIRGVGREDVERGQVLAKPGSVTPHTEFSAEVYVLSKDEGGRHTPFFANYRPQFYFRTTDVTGEVI-----LPEGTEMVMPGDNVTINVKLIAPIAMDEGLRFAIREGGRTVGSGVVSKI 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BACCQ (Elongation factor Tu OS=Bacillus cereus (strain Q1) GN=tuf PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.967e-47
Identity = 91/145 (62.76%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LD+A AGDN+G LLRGV + DIQRG VLAK G++  H KF A V+VL KEEGGRH+PFFA YRPQFY RTTDVTG +        E ++MVMPGD ++M +ELI P+A E+G +F+IREGG+TVG GV+ +I+E
Sbjct:  256 TVTGVEMFRKLLDQAQAGDNIGALLRGVAREDIQRGQVLAKSGSVKAHAKFKAEVFVLSKEEGGRHTPFFANYRPQFYFRTTDVTGII-----QLPEGTEMVMPGDNVEMTIELIAPIAIEEGTKFSIREGGRTVGYGVVATIVE 395          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BACC7 (Elongation factor Tu OS=Bacillus cereus (strain AH187) GN=tuf PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.967e-47
Identity = 91/145 (62.76%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LD+A AGDN+G LLRGV + DIQRG VLAK G++  H KF A V+VL KEEGGRH+PFFA YRPQFY RTTDVTG +        E ++MVMPGD ++M +ELI P+A E+G +F+IREGG+TVG GV+ +I+E
Sbjct:  256 TVTGVEMFRKLLDQAQAGDNIGALLRGVAREDIQRGQVLAKSGSVKAHAKFKAEVFVLSKEEGGRHTPFFANYRPQFYFRTTDVTGII-----QLPEGTEMVMPGDNVEMTIELIAPIAIEEGTKFSIREGGRTVGYGVVATIVE 395          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BACC1 (Elongation factor Tu OS=Bacillus cereus (strain ATCC 10987) GN=tuf PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.967e-47
Identity = 91/145 (62.76%), Postives = 113/145 (77.93%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LD+A AGDN+G LLRGV + DIQRG VLAK G++  H KF A V+VL KEEGGRH+PFFA YRPQFY RTTDVTG +        E ++MVMPGD ++M +ELI P+A E+G +F+IREGG+TVG GV+ +I+E
Sbjct:  256 TVTGVEMFRKLLDQAQAGDNIGALLRGVAREDIQRGQVLAKSGSVKAHAKFKAEVFVLSKEEGGRHTPFFANYRPQFYFRTTDVTGII-----QLPEGTEMVMPGDNVEMTIELIAPIAIEEGTKFSIREGGRTVGYGVVATIVE 395          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU1_STRAW (Elongation factor Tu 1 OS=Streptomyces avermitilis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.967e-47
Identity = 89/143 (62.24%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 435
            TVTG+EMF+K LDE  AG+NVGLLLRG+++ D++RG V+ KPG++TPHT+F A  Y+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD  +M VELI PVA E+G++FAIREGG+TVGAG +  I
Sbjct:  258 TVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQVIIKPGSVTPHTEFEAQAYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNTEMTVELIQPVAMEEGLKFAIREGGRTVGAGQVTKI 395          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU1_SERP5 (Elongation factor Tu 1 OS=Serratia proteamaculans (strain 568) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.967e-47
Identity = 90/144 (62.50%), Postives = 113/144 (78.47%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            T TGVEMF+K LDE  AG+NVG+LLRG+++ DI+RG VLAKPG+I PHT+F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + M V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  255 TCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVLAKPGSIKPHTQFDSEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVNMKVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_THENN (Elongation factor Tu OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=tuf PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.569e-47
Identity = 91/144 (63.19%), Postives = 112/144 (77.78%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VT VEMF+K LDE +AGDNVG LLRG+ K +++RG VLA PG+I PH +F A VYVLKKEEGGRH+PF  GY+PQFY+RT DVTG +  +     E  +MVMPGD ++M +ELI PVA E+G RFAIREGG+TVGAGV+  +IE
Sbjct:  261 VTSVEMFRKELDEGIAGDNVGCLLRGIDKDEVERGQVLAAPGSIKPHKRFKAEVYVLKKEEGGRHTPFTKGYKPQFYIRTADVTGEIVGL----PEGVEMVMPGDHVEMEIELIYPVAIEKGQRFAIREGGRTVGAGVVTEVIE 400          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PARDP1.967e-4762.76Elongation factor Tu OS=Paracoccus denitrificans (... [more]
EFTU_NITWN1.967e-4762.76Elongation factor Tu OS=Nitrobacter winogradskyi (... [more]
EFTU_NITHX1.967e-4762.76Elongation factor Tu OS=Nitrobacter hamburgensis (... [more]
EFTU_ERYLH1.967e-4762.94Elongation factor Tu OS=Erythrobacter litoralis (s... [more]
EFTU_BACCQ1.967e-4762.76Elongation factor Tu OS=Bacillus cereus (strain Q1... [more]
EFTU_BACC71.967e-4762.76Elongation factor Tu OS=Bacillus cereus (strain AH... [more]
EFTU_BACC11.967e-4762.76Elongation factor Tu OS=Bacillus cereus (strain AT... [more]
EFTU1_STRAW1.967e-4762.24Elongation factor Tu 1 OS=Streptomyces avermitilis... [more]
EFTU1_SERP51.967e-4762.50Elongation factor Tu 1 OS=Serratia proteamaculans ... [more]
EFTU_THENN2.569e-4763.19Elongation factor Tu OS=Thermotoga neapolitana (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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