CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP8 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 8801) GN=tuf PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.041e-56
Identity = 104/145 (71.72%), Postives = 124/145 (85.52%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMFQKTL+E +AGDNVGLLLRGV+K DI+RGMV+AKPG+ITPHT+F   VYVL KEEGGRH+PFF  Y+PQFY+RTTDVTG +    +D+ E  +MVMPGDRIKM VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  265 TVTGVEMFQKTLEEGLAGDNVGLLLRGVKKEDIERGMVIAKPGSITPHTQFEGEVYVLTKEEGGRHTPFFKNYKPQFYVRTTDVTGSIVDYTSDEGETVEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKILK 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ASTLO (Elongation factor Tu, plastid OS=Astasia longa GN=tufA PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.041e-56
Identity = 101/145 (69.66%), Postives = 127/145 (87.59%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T+TG+EMFQK+LDEA+AGDNVG+LLRG+QK +++RGMV+AKPGTI PH KF + VY+L KEEGGRH+PFF GY+PQFY+RTTDVTG++ S  +D     +MVMPGD+IKM+VEL+ P+A E+GMRFAIREGGKTVGAGVI +II+
Sbjct:  265 TITGLEMFQKSLDEAIAGDNVGVLLRGIQKNEVERGMVIAKPGTIQPHIKFNSQVYILTKEEGGRHTPFFEGYKPQFYVRTTDVTGKIESFKSDDGTTVQMVMPGDKIKMIVELVQPIAIEKGMRFAIREGGKTVGAGVIINIID 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_SPIPL (Elongation factor Tu OS=Spirulina platensis GN=tuf PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.359e-56
Identity = 104/144 (72.22%), Postives = 120/144 (83.33%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            TVTG EMFQKTL+E MAGDNVGLLLRG+QK D+QRGMV+AKP +ITPHTKF A VY+LKKEEGGRH+PFF GYRPQFY+RTTDVTG +     D     +MV+PGDRI M V+LI P+A EQGMRFAIREGG+TVGAGV+  I+
Sbjct:  266 TVTGAEMFQKTLEEGMAGDNVGLLLRGIQKNDVQRGMVIAKPKSITPHTKFEAEVYILKKEEGGRHTPFFKGYRPQFYVRTTDVTGTIDEFTADDGSTPEMVIPGDRINMTVQLICPIAIEQGMRFAIREGGRTVGAGVVAKIL 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ANAVT (Elongation factor Tu OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tuf PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.359e-56
Identity = 102/147 (69.39%), Postives = 126/147 (85.71%), Query Frame = 1
Query:    1 NFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            N TVTG+EMF+K+LDE MAGDN G+LLRG+QK DI+RGMVLAKPG+ITPHT+F   VYVL ++EGGR +PFFAGYRPQFY+RTTDVTG + +  +D+ E  +MVMPGDRIK+ VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  263 NTTVTGIEMFKKSLDEGMAGDNAGVLLRGIQKTDIERGMVLAKPGSITPHTQFEGEVYVLTEKEGGRKTPFFAGYRPQFYVRTTDVTGTIKAFTSDEGEAVEMVMPGDRIKVTVELINPIAIEQGMRFAIREGGRTIGAGVVSKIVK 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.775e-56
Identity = 105/145 (72.41%), Postives = 123/145 (84.83%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTG+EMFQKTLDE++AGDNVG+LLRG+QK +IQRGMVLAKP +ITPHT F A VYVL KEEGGR +PFF+GYRPQFY+RTTDVTG++ S   D  E  KMV+PGDRIKM  ELI P+A E+ MRFAIREGGKTVGAGV+  I++
Sbjct:  265 TVTGLEMFQKTLDESIAGDNVGILLRGIQKTEIQRGMVLAKPKSITPHTNFEAQVYVLNKEEGGRDTPFFSGYRPQFYVRTTDVTGKIESFCTDAGEPIKMVLPGDRIKMKAELIQPIAIERNMRFAIREGGKTVGAGVVGKILK 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PROM3 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9303) GN=tuf PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.775e-56
Identity = 104/145 (71.72%), Postives = 122/145 (84.14%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE +AGDN GLLLRG++K DI+RGMVL KPG+ITPHTKF   VYVLKKEEGGRH+PFFAGYRPQFY+RTTDVTG++++   +     +MVMPGD IKM  ELI PVA EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  255 TVTGVEMFRKDLDEGLAGDNCGLLLRGIEKEDIERGMVLVKPGSITPHTKFEGQVYVLKKEEGGRHTPFFAGYRPQFYIRTTDVTGQITAFTAEDGSNVEMVMPGDNIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIQ 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_MESVI (Elongation factor Tu, chloroplastic OS=Mesostigma viride GN=tufA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.775e-56
Identity = 101/147 (68.71%), Postives = 125/147 (85.03%), Query Frame = 1
Query:    1 NFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            N TVTG+EMFQKTL+E++AGDNVG+LLRG+QK  ++RGMVLAKP TI PH +F + VYVL KEEGGRH+PFF GYRPQFY+RTTDVTG++ S   D   +++MVMPGDR+KMVV LI P+A E+GMRFAIREGG+TVGAG++  I+E
Sbjct:  264 NTTVTGLEMFQKTLEESVAGDNVGVLLRGIQKDQVERGMVLAKPNTIKPHIRFESEVYVLAKEEGGRHTPFFPGYRPQFYVRTTDVTGKIDSFKADDGSDTQMVMPGDRVKMVVSLIQPIAIEKGMRFAIREGGRTVGAGIVSEILE 410          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PSEAK (Elongation factor Tu, chloroplastic OS=Pseudendoclonium akinetum GN=tufA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.318e-56
Identity = 105/145 (72.41%), Postives = 122/145 (84.14%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTG+EMFQKTLDE +AGDNVG+LLRGVQK +IQRGMVLA PGTI PHTKF A VY+L KEEGGRH+PFF GYRPQFY+RTTDVTG++ S   D   E+ M   GDR+KMVVELI P+A E GMRFAIREGG+TVGAGV+ +I++
Sbjct:  265 TVTGLEMFQKTLDETVAGDNVGVLLRGVQKDNIQRGMVLAAPGTIKPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSEALMATSGDRLKMVVELIQPIAVENGMRFAIREGGRTVGAGVVSTILK 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_RHDSA (Elongation factor Tu, chloroplastic OS=Rhodomonas salina GN=tufA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.027e-56
Identity = 101/145 (69.66%), Postives = 123/145 (84.83%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T+TG+EMFQK+L+EA+AGDNVG+L+RG+QK DI+RGMVLA PG+ITPHTKF   VYVL KEEGGRH+PFF GYRPQFY+RTTDVTG ++    D    ++MVMPGDRIKM  +LI P+A E+GMRFAIREGG+TVGAGV+  I+E
Sbjct:  265 TITGLEMFQKSLEEALAGDNVGILVRGIQKTDIERGMVLAAPGSITPHTKFEGEVYVLTKEEGGRHTPFFTGYRPQFYVRTTDVTGTIAQFTADDGSAAEMVMPGDRIKMTAQLIHPIAIEKGMRFAIREGGRTVGAGVVSKILE 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 3.954e-56
Identity = 101/145 (69.66%), Postives = 125/145 (86.21%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTG+EMF+K+L+E +AGDN GLLLRG++K D++RGMV+AKPG+ITPHTKF   VYVL ++EGGR +PFFAGYRPQFY+RTTDVTG ++S  +D    ++MVMPGDRIKM VELI P+A EQGMRFAIREGG+T+GAGV+  IIE
Sbjct:  265 TVTGIEMFKKSLEEGIAGDNAGLLLRGLKKEDVERGMVIAKPGSITPHTKFEGEVYVLTEKEGGRKTPFFAGYRPQFYVRTTDVTGTITSFTSDDGSAAEMVMPGDRIKMTVELIQPIAIEQGMRFAIREGGRTIGAGVVSKIIE 409          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CYAP81.041e-5671.72Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_ASTLO1.041e-5669.66Elongation factor Tu, plastid OS=Astasia longa GN=... [more]
EFTU_SPIPL1.359e-5672.22Elongation factor Tu OS=Spirulina platensis GN=tuf... [more]
EFTU_ANAVT1.359e-5669.39Elongation factor Tu OS=Anabaena variabilis (strai... [more]
EFTU_PROWI1.775e-5672.41Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_PROM31.775e-5671.72Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_MESVI1.775e-5668.71Elongation factor Tu, chloroplastic OS=Mesostigma ... [more]
EFTU_PSEAK2.318e-5672.41Elongation factor Tu, chloroplastic OS=Pseudendocl... [more]
EFTU_RHDSA3.027e-5669.66Elongation factor Tu, chloroplastic OS=Rhodomonas ... [more]
EFTU_THEEB3.954e-5669.66Elongation factor Tu OS=Thermosynechococcus elonga... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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