CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_BIGNA (Elongation factor Tu, chloroplastic OS=Bigelowiella natans GN=tufA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 6.745e-56
Identity = 100/145 (68.97%), Postives = 127/145 (87.59%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-ESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            TVTG+EMFQK L E++AGDNVG+LLRG+QKADIQRGMV+A+PG+ITPH  F A VY+L KEEGGRH+PFF GYRPQFY+RTTDVTG++ S+ +D+D  E +MV+PGDR+ M VEL+ P+A E+GMRFAIREGG+TVGAGV+ +++
Sbjct:  265 TVTGLEMFQKMLQESIAGDNVGMLLRGIQKADIQRGMVVAQPGSITPHVSFDAQVYILTKEEGGRHTPFFKGYRPQFYVRTTDVTGKIESLKSDEDNTEMRMVVPGDRVTMSVELVQPIAIEKGMRFAIREGGRTVGAGVVSNVV 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP7 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7424) GN=tuf PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.503e-55
Identity = 104/145 (71.72%), Postives = 120/145 (82.76%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMFQKTL+E +AGDNVGLLLRGVQK +I+RGMV+AKPG+I PHT+F   VYVL KEEGGRH+PFF  YRPQFY+RTTDVTG +     D     +MVMPGDRIKM VELI P+A EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  266 TVTGVEMFQKTLEEGLAGDNVGLLLRGVQKEEIERGMVIAKPGSIKPHTQFEGEVYVLTKEEGGRHTPFFKNYRPQFYVRTTDVTGTIVDYTADDGSAVEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKIIQ 410          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP4 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=tuf PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.962e-55
Identity = 102/145 (70.34%), Postives = 123/145 (84.83%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTG+EMF+K+LDE MAGDN GLLLRG++K DI+RGMVLAKPG+ITPHT+F   VYVL ++EGGR +PFFAGYRPQFY+RTTDVTG + S   D    ++MVMPGDRIKM VELI P+A EQGMRFAIREGG+T+GAGV+  I++
Sbjct:  265 TVTGIEMFKKSLDEGMAGDNAGLLLRGLKKEDIERGMVLAKPGSITPHTEFEGEVYVLTEKEGGRKTPFFAGYRPQFYVRTTDVTGTIKSFTADDGSNAEMVMPGDRIKMNVELINPIAIEQGMRFAIREGGRTIGAGVVSKIVK 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_MICAN (Elongation factor Tu OS=Microcystis aeruginosa (strain NIES-843) GN=tuf PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.347e-55
Identity = 101/145 (69.66%), Postives = 119/145 (82.07%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTG+EMF+K+LD+ MAGDN G+LLRG+QK DI+RGMV+AKPGTI PHT+F   VYVL KEEGGRH+PFF  YRPQFY+RTTDVTG +     D     +MVMPGDRIKM VELI P+A EQGMRFAIREGG+T+G+GVI  II+
Sbjct:  265 TVTGIEMFKKSLDQGMAGDNAGILLRGIQKTDIERGMVIAKPGTIKPHTQFEGEVYVLSKEEGGRHTPFFKNYRPQFYVRTTDVTGTIQDYTADDGSTVEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGSGVISKIIK 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_THAPS (Elongation factor Tu, chloroplastic OS=Thalassiosira pseudonana GN=tufA PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 9.739e-55
Identity = 100/145 (68.97%), Postives = 119/145 (82.07%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T+TG+EMFQKTL+E  AGDNVG+LLRGV + +I+RGMVL+KPGTITPHT F + VYVL KEEGGRH+PFF GYRPQFY+RTTDVTG +     D     +MVMPGDRIKM  ELI PVA E+GMRFAIREGG+T+GAGV+  I++
Sbjct:  265 TITGIEMFQKTLEEGFAGDNVGILLRGVTRENIERGMVLSKPGTITPHTNFESEVYVLTKEEGGRHTPFFTGYRPQFYVRTTDVTGSIEQFTADDGTIVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTIGAGVVSKIVK 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ODOSI (Elongation factor Tu, chloroplastic OS=Odontella sinensis GN=tufA PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 9.739e-55
Identity = 100/145 (68.97%), Postives = 119/145 (82.07%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T+TG+EMFQKTLDE  AGDNVG+LLRGV + DI+ GMVL++PGTITPHT F + VYVL K+EGGRH+PFF GYRPQFY+RTTDVTG ++    D     +MVMPGDRIKM  ELI PVA E+GMRFAIREGG+T+GAGV+  II+
Sbjct:  265 TITGIEMFQKTLDEGFAGDNVGILLRGVTREDIEAGMVLSEPGTITPHTNFESEVYVLTKDEGGRHTPFFTGYRPQFYVRTTDVTGAITQFTADDGSIVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTIGAGVVSKIIQ 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PHATR (Elongation factor Tu, chloroplastic OS=Phaeodactylum tricornutum GN=tufA PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.834e-54
Identity = 99/145 (68.28%), Postives = 118/145 (81.38%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T+TG+EMFQKTL+E  AGDNVG+LLRGV + +I+RGMVLAKPGTITPHT F + VYVL K+EGGRH+PFF GYRPQFY+RTTDVTG ++    D     +MVMPGDRIKM  E I PVA E GMRFAIREGG+T+GAGV+  I++
Sbjct:  265 TITGIEMFQKTLEEGFAGDNVGILLRGVTRENIERGMVLAKPGTITPHTSFESEVYVLTKDEGGRHTPFFTGYRPQFYVRTTDVTGSITQFTADDGSVVEMVMPGDRIKMTAEFIYPVAIEAGMRFAIREGGRTIGAGVVSKIVK 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_SCEOB (Elongation factor Tu, chloroplastic OS=Scenedesmus obliquus GN=tufA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 4.833e-54
Identity = 102/153 (66.67%), Postives = 126/153 (82.35%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMN---------DKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMF+KTLDE MAGDNVG+LLRG+QK D++RGMVLAKPG+ITPHTKF A VYVL KEEGGRHSPF  GY+PQF++RTTDVTG++ S  +          ++  +KM MPGDRI++ V+LI PVA E+GMRFAIREGG+TVGAGV+ +I+E
Sbjct:  266 VTGLEMFKKTLDETMAGDNVGVLLRGIQKKDVERGMVLAKPGSITPHTKFEAQVYVLTKEEGGRHSPFLVGYQPQFFIRTTDVTGKIVSFTHIQMKNPSSVAEEHSNKMAMPGDRIEVTVQLIYPVAVEKGMRFAIREGGRTVGAGVVTNILE 418          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NOSP7 (Elongation factor Tu OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tuf PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.837e-53
Identity = 97/144 (67.36%), Postives = 124/144 (86.11%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMF+K+L+E +AGDN G+LLRG++K DI+RGMV+AKPG+ITPHT+F   VYVL ++EGGR +PFFAGYRPQFY+RTTDVTG + +  +D+ +E +MVMPGDRIKM VELI  +A EQGMRFAIREGG+T+GAGV+  II+
Sbjct:  266 VTGIEMFKKSLEEGLAGDNAGVLLRGLKKEDIERGMVIAKPGSITPHTQFEGEVYVLTEKEGGRKTPFFAGYRPQFYVRTTDVTGTIKAYTSDEGKEVEMVMPGDRIKMTVELINAIAIEQGMRFAIREGGRTIGAGVVSKIIK 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHLRE (Elongation factor Tu, chloroplastic OS=Chlamydomonas reinhardtii GN=tufA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.399e-53
Identity = 103/153 (67.32%), Postives = 123/153 (80.39%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMN---------DKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMF+KTLDE +AGDNVG+LLRGVQK DI+RGMV+AKPGTITPHTKF A VYVL KEEGGRHS F  GY+PQFY+RTTDVTG+V    +          ++  +KM MPGDRI M VELI P+A E+GMRFAIREGG+TVGAGV+ +I++
Sbjct:  266 VTGLEMFKKTLDETLAGDNVGVLLRGVQKKDIERGMVIAKPGTITPHTKFEAQVYVLTKEEGGRHSAFMIGYQPQFYVRTTDVTGKVVGFNHIQMRNPSSVAEEHSNKMAMPGDRISMTVELINPIAIEKGMRFAIREGGRTVGAGVVTNIVQ 418          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BIGNA6.745e-5668.97Elongation factor Tu, chloroplastic OS=Bigelowiell... [more]
EFTU_CYAP71.503e-5571.72Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_CYAP41.962e-5570.34Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_MICAN3.347e-5569.66Elongation factor Tu OS=Microcystis aeruginosa (st... [more]
EFTU_THAPS9.739e-5568.97Elongation factor Tu, chloroplastic OS=Thalassiosi... [more]
EFTU_ODOSI9.739e-5568.97Elongation factor Tu, chloroplastic OS=Odontella s... [more]
EFTU_PHATR2.834e-5468.28Elongation factor Tu, chloroplastic OS=Phaeodactyl... [more]
EFTU_SCEOB4.833e-5466.67Elongation factor Tu, chloroplastic OS=Scenedesmus... [more]
EFTU_NOSP71.837e-5367.36Elongation factor Tu OS=Nostoc punctiforme (strain... [more]
EFTU_CHLRE2.399e-5367.32Elongation factor Tu, chloroplastic OS=Chlamydomon... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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