CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:544..1088. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_HERAU (Elongation factor Tu OS=Herpetosiphon aurantiacus GN=tuf PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.555e-52
Identity = 100/143 (69.93%), Postives = 118/143 (82.52%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            VTGVEMF+K LDE  AGDNVG LLRG+++ D++RG VLAKPG+I PHTKF A VYVLKKEEGGRHSPFF+GYRPQFY+RTTDVTG +        E  +MVMPGD I+M VELI+PVA EQG++FAIREGG+TVGAG++  II
Sbjct:  262 VTGVEMFKKLLDEGRAGDNVGALLRGIERTDVERGQVLAKPGSIKPHTKFKAEVYVLKKEEGGRHSPFFSGYRPQFYVRTTDVTGAIG-----LPEGVEMVMPGDNIQMTVELIVPVAIEQGLKFAIREGGRTVGAGIVPEII 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU1_ROSS1 (Elongation factor Tu 1 OS=Roseiflexus sp. (strain RS-1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.031e-52
Identity = 98/144 (68.06%), Postives = 121/144 (84.03%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMFQKTLDE +AGDNVG+LLRG+++ +++RG VLA PG+I PH KF A VYVLKKEEGGRH+PFF+GYRPQFY+RTTDVTG +        E  +MVMPGD I+M VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  263 VTGVEMFQKTLDEGIAGDNVGVLLRGIERTEVERGQVLAAPGSIKPHAKFKANVYVLKKEEGGRHTPFFSGYRPQFYIRTTDVTGAI-----HLPEGVEMVMPGDNIEMTVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CYCME (Elongation factor Tu, chloroplastic OS=Cyclotella meneghiniana GN=tufA PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.464e-52
Identity = 97/145 (66.90%), Postives = 115/145 (79.31%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T+TG+EMFQKTL+E  AGDNVG+LLRGV + +I+RGMVLAKPGTITPHT F + VYVL KEEGGRH+PFF GY P FY+ TTDVTG +     D     +MVMPGDRIKM  ELI PVA E+GMRF IREGG+T+GAGV+  I++
Sbjct:  265 TITGIEMFQKTLEEGFAGDNVGILLRGVTRENIERGMVLAKPGTITPHTNFESEVYVLTKEEGGRHTPFFTGYSPIFYVITTDVTGSIDQFTADDGSIVEMVMPGDRIKMTAELIYPVAIEEGMRFVIREGGRTIGAGVVSKIVK 409          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU2_ROSCS (Elongation factor Tu 2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.464e-52
Identity = 98/144 (68.06%), Postives = 121/144 (84.03%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMFQKTLDE +AGDNVG+LLRG+++ +++RG VLA PG+I PH KF A VYVLKKEEGGRH+PFF GYRPQFY+RTTDVTG +S          +MVMPGD I+M+VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  263 VTGVEMFQKTLDEGIAGDNVGVLLRGIERTEVERGQVLAAPGSIKPHAKFKANVYVLKKEEGGRHTPFFPGYRPQFYIRTTDVTGAIS-----LPAGVEMVMPGDNIEMLVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU1_ROSCS (Elongation factor Tu 1 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.464e-52
Identity = 98/144 (68.06%), Postives = 121/144 (84.03%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMFQKTLDE +AGDNVG+LLRG+++ +++RG VLA PG+I PH KF A VYVLKKEEGGRH+PFF GYRPQFY+RTTDVTG +S          +MVMPGD I+M+VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  263 VTGVEMFQKTLDEGIAGDNVGVLLRGIERTEVERGQVLAAPGSIKPHAKFKANVYVLKKEEGGRHTPFFPGYRPQFYIRTTDVTGAIS-----LPAGVEMVMPGDNIEMLVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHAVU (Elongation factor Tu, chloroplastic OS=Chara vulgaris GN=tufA PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.524e-52
Identity = 90/144 (62.50%), Postives = 123/144 (85.42%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMF++ L++  AG+N+G+LLRG++K DI+RGMV+A+PGTI PHT+F A VY+L+KEEGGRHSPFFAGYRPQF++RT DVTG + +   D  ++++MVMPGDR+KM+V LI P+A E+ MRFAIREGG+T+GAGV+  I++
Sbjct:  267 VTGLEMFRRLLEQGFAGENIGVLLRGIEKKDIERGMVIAQPGTIEPHTRFEAQVYILRKEEGGRHSPFFAGYRPQFFVRTADVTGVIEAFEYDNGDKTRMVMPGDRVKMIVNLICPIAIEKKMRFAIREGGRTIGAGVVLQILD 410          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CLONN (Elongation factor Tu OS=Clostridium novyi (strain NT) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.909e-52
Identity = 100/145 (68.97%), Postives = 118/145 (81.38%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            T+TGVEMF+K LDEAMAGDN+G LLRGVQ+ +I+RG VLAKPG++TPH KF+  VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG ++       E  +MVMPGD I M VELI PVA E  +RFAIREGG+TVG+GV+ SI+E
Sbjct:  254 TITGVEMFRKMLDEAMAGDNIGALLRGVQRDEIERGQVLAKPGSVTPHKKFVGQVYVLKKEEGGRHTPFFNGYRPQFYFRTTDVTGSIA-----LPEGVEMVMPGDHIDMNVELITPVAMENNLRFAIREGGRTVGSGVVTSIVE 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU2_THETN (Elongation factor Tu-B OS=Thermoanaerobacter tengcongensis GN=tufB PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.909e-52
Identity = 99/144 (68.75%), Postives = 118/144 (81.94%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMF+KTLDEA AGDN+G+LLRG+QK +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD + + VELI P+A E+G++FAIREGG+TVGAGV+ +IIE
Sbjct:  262 VTGVEMFRKTLDEAQAGDNIGVLLRGIQKDEVERGQVLAKPGTIKPHTKFEAQVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----QLPEGVEMVMPGDHVTLRVELITPIAMEEGLKFAIREGGRTVGAGVVSAIIE 400          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_MOOTA (Elongation factor Tu OS=Moorella thermoacetica (strain ATCC 39073) GN=tuf PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.008e-51
Identity = 100/144 (69.44%), Postives = 118/144 (81.94%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMF+K LDEA+AGDN+G LLRGV + +++RGMVLAKPG+I PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG V     +  E  +MVMPGD I+M +ELI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  262 VTGVEMFRKILDEAVAGDNIGTLLRGVDRKEVERGMVLAKPGSIKPHTKFNAEVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGVV-----NLPEGVEMVMPGDNIRMTIELITPIAIEEGLRFAIREGGRTVGAGVVTGIIE 400          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU2_ROSS1 (Elongation factor Tu 2 OS=Roseiflexus sp. (strain RS-1) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.008e-51
Identity = 97/144 (67.36%), Postives = 120/144 (83.33%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMFQKTLDE +AGDNVG+LLRG+++ +++RG VLA PG+I PH  F A VYVLKKEEGGRH+PFF+GYRPQFY+RTTDVTG +        E  +MVMPGD I+M VELI+PVA E+G+RFAIREGG+TVGAGV+ +I++
Sbjct:  263 VTGVEMFQKTLDEGIAGDNVGVLLRGIERTEVERGQVLAAPGSIKPHATFKANVYVLKKEEGGRHTPFFSGYRPQFYIRTTDVTGAI-----HLPEGVEMVMPGDNIEMTVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_HERAU1.555e-5269.93Elongation factor Tu OS=Herpetosiphon aurantiacus ... [more]
EFTU1_ROSS12.031e-5268.06Elongation factor Tu 1 OS=Roseiflexus sp. (strain ... [more]
EFTU_CYCME3.464e-5266.90Elongation factor Tu, chloroplastic OS=Cyclotella ... [more]
EFTU2_ROSCS3.464e-5268.06Elongation factor Tu 2 OS=Roseiflexus castenholzii... [more]
EFTU1_ROSCS3.464e-5268.06Elongation factor Tu 1 OS=Roseiflexus castenholzii... [more]
EFTU_CHAVU4.524e-5262.50Elongation factor Tu, chloroplastic OS=Chara vulga... [more]
EFTU_CLONN5.909e-5268.97Elongation factor Tu OS=Clostridium novyi (strain ... [more]
EFTU2_THETN5.909e-5268.75Elongation factor Tu-B OS=Thermoanaerobacter tengc... [more]
EFTU_MOOTA1.008e-5169.44Elongation factor Tu OS=Moorella thermoacetica (st... [more]
EFTU2_ROSS11.008e-5167.36Elongation factor Tu 2 OS=Roseiflexus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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