CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMF (Elongation factor Tu OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.316e-51
Identity = 98/144 (68.06%), Postives = 117/144 (81.25%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      +E  +MVMPG+ + + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  255 TCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVT-----LEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMB (Elongation factor Tu OS=Neisseria meningitidis serogroup B GN=tufA PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.316e-51
Identity = 98/144 (68.06%), Postives = 117/144 (81.25%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      +E  +MVMPG+ + + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  255 TCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVT-----LEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NEIMA (Elongation factor Tu OS=Neisseria meningitidis serogroup A GN=tufA PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.316e-51
Identity = 98/144 (68.06%), Postives = 117/144 (81.25%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      +E  +MVMPG+ + + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  255 TCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVT-----LEEGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ALKOO (Elongation factor Tu OS=Alkaliphilus oremlandii (strain OhILAs) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.316e-51
Identity = 99/144 (68.75%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMF+K LD+A AGDNVGLLLRG+Q+ +IQRG VL KPGTI PHTKF A VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG          +  +MVMPGD + M ++LI P+A E+G+RFAIREGG+TVG+GV+ SIIE
Sbjct:  259 VTGVEMFRKLLDQAQAGDNVGLLLRGIQRTEIQRGQVLCKPGTIKPHTKFKAEVYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGATK-----LPDGMEMVMPGDNVTMEIDLIHPIAIEEGLRFAIREGGRTVGSGVVASIIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU1_THETN (Elongation factor Tu-A OS=Thermoanaerobacter tengcongensis GN=tufA PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.316e-51
Identity = 98/144 (68.06%), Postives = 118/144 (81.94%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMF+KTLDEA AGDN+G+LLRG+Q+ +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD + + VELI P+A E+G++FAIREGG+TVGAGV+ +IIE
Sbjct:  262 VTGVEMFRKTLDEAQAGDNIGVLLRGIQRDEVERGQVLAKPGTIKPHTKFEAQVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----QLPEGVEMVMPGDHVTLRVELITPIAMEEGLKFAIREGGRTVGAGVVSAIIE 400          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHACO (Elongation factor Tu, chloroplastic OS=Chara connivens GN=tufA PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.245e-51
Identity = 89/139 (64.03%), Postives = 120/139 (86.33%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVI 426
            VTG+EMF++ L++  AG+N+G+LLRG++K DI+RGMV+A+PGTI PHT+F A VY+L+KEEGGRHSPFFAGYRPQF++RT DVTG + +   D  ++++MVMPGDR+KM+V LI P+A E+ MRFAIREGG+T+GAGV+
Sbjct:  267 VTGLEMFRRLLEQGFAGENIGVLLRGIEKKDIERGMVIAQPGTIEPHTRFEAQVYILRKEEGGRHSPFFAGYRPQFFVRTADVTGVIEAFEYDNGDKTRMVMPGDRVKMIVNLICPIAIEKKMRFAIREGGRTIGAGVV 405          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU2_ALKMQ (Elongation factor Tu 2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=tuf2 PE=3 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 2.245e-51
Identity = 99/144 (68.75%), Postives = 117/144 (81.25%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMF+K LD+  AGDNVG+LLRG+Q+ +I+RG VLAK G+I PHTKF+A VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD I M +ELI P+A E+G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  259 VTGVEMFRKLLDQGQAGDNVGILLRGIQRDEIERGQVLAKTGSIQPHTKFMAEVYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIK-----LPEGVEMVMPGDNITMEIELISPIATEEGLRFAIREGGRTVGAGVVASIIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU1_ALKMQ (Elongation factor Tu 1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.245e-51
Identity = 99/144 (68.75%), Postives = 117/144 (81.25%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTGVEMF+K LD+  AGDNVG+LLRG+Q+ +I+RG VLAK G+I PHTKF+A VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        E  +MVMPGD I M +ELI P+A E+G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  259 VTGVEMFRKLLDQGQAGDNVGILLRGIQRDEIERGQVLAKTGSIQPHTKFMAEVYVLKKEEGGRHTPFFDGYRPQFYFRTTDVTGSIK-----LPEGVEMVMPGDNITMEIELISPIATEEGLRFAIREGGRTVGAGVVASIIE 397          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_SORC5 (Elongation factor Tu OS=Sorangium cellulosum (strain So ce56) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.932e-51
Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            VTGVEMF+K LD+  AGDNVG LLRGV+K +I+RG VLAKPG+ITPHTKF   VYVLKKEEGGRH+PFF  YRPQFY+RTTDVTG V     +  E  KMVMPGD I M +ELI PVA E+ MRFAIREGGKTVGAGV+  I+
Sbjct:  258 VTGVEMFRKLLDQGQAGDNVGCLLRGVEKEEIERGQVLAKPGSITPHTKFTGEVYVLKKEEGGRHTPFFTNYRPQFYIRTTDVTGTV-----NLPEGVKMVMPGDNITMTIELIAPVALEEQMRFAIREGGKTVGAGVVTKIL 395          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NEIG1 (Elongation factor Tu OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.830e-51
Identity = 97/144 (67.36%), Postives = 117/144 (81.25%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            T TGVEMF+K LDE  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      ++  +MVMPG+ + + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  255 TCTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVT-----LEKGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_NEIMF1.316e-5168.06Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIMB1.316e-5168.06Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_NEIMA1.316e-5168.06Elongation factor Tu OS=Neisseria meningitidis ser... [more]
EFTU_ALKOO1.316e-5168.75Elongation factor Tu OS=Alkaliphilus oremlandii (s... [more]
EFTU1_THETN1.316e-5168.06Elongation factor Tu-A OS=Thermoanaerobacter tengc... [more]
EFTU_CHACO2.245e-5164.03Elongation factor Tu, chloroplastic OS=Chara conni... [more]
EFTU2_ALKMQ2.245e-5168.75Elongation factor Tu 2 OS=Alkaliphilus metalliredi... [more]
EFTU1_ALKMQ2.245e-5168.75Elongation factor Tu 1 OS=Alkaliphilus metalliredi... [more]
EFTU_SORC52.932e-5170.63Elongation factor Tu OS=Sorangium cellulosum (stra... [more]
EFTU_NEIG13.830e-5167.36Elongation factor Tu OS=Neisseria gonorrhoeae (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
back to top