CK739762

Overview
NameCK739762
Unique NameCK739762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CALS8 (Elongation factor Tu OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=tuf PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.830e-51
Identity = 98/144 (68.06%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMF+K LDEA+AGDNVG LLRG+QK +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG ++       E  +M MPGD ++M VELI P+A E G+RFAIREGG+TVGAG + +IIE
Sbjct:  262 VTGIEMFRKVLDEAVAGDNVGCLLRGIQKNEVERGQVLAKPGTIKPHTKFKAQVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGTIT-----LPEGVEMCMPGDNVEMTVELISPIAIESGLRFAIREGGRTVGAGSVTTIIE 400          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.830e-51
Identity = 98/144 (68.06%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMF+K LDEA+AGDNVG LLRG+QK +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG ++       E  +M MPGD ++M VELI P+A E G+RFAIREGG+TVGAG + +IIE
Sbjct:  262 VTGIEMFRKVLDEAVAGDNVGCLLRGIQKNEVERGQVLAKPGTIKPHTKFKAQVYVLTKEEGGRHTPFFNGYRPQFYFRTTDVTGTIT-----LPEGVEMCMPGDNVEMTVELISPIAIESGLRFAIREGGRTVGAGSVTTIIE 400          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NAUPA (Elongation factor Tu OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=tuf PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.002e-51
Identity = 98/144 (68.06%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMF+K +DEA AGDNVG+LLRG++K +++RG VLAKPG+ITPHTKF A VY L KEEGGRH PFF GYRPQFY+RTTDVTG V        E  +MVMPGD +K+ VELI P+A E+G RFAIREGG+TVGAGV+  IIE
Sbjct:  261 VTGIEMFRKEMDEAQAGDNVGVLLRGIKKDEVERGQVLAKPGSITPHTKFEAEVYALTKEEGGRHKPFFNGYRPQFYIRTTDVTGSVI-----LPEGVEMVMPGDNVKLTVELIAPIALEEGTRFAIREGGRTVGAGVVTKIIE 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_NITSB (Elongation factor Tu OS=Nitratiruptor sp. (strain SB155-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.533e-51
Identity = 97/145 (66.90%), Postives = 118/145 (81.38%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LD+  AGDNVG+LLRG +K +++RG VLA+PGTITPHTKF A +YVL KEEGGRH+PFF+GYRPQFY+RTTDVTG ++       E  +MVMPGD +K+  ELI P+A E+G RFAIREGG+TVGAGV+  IIE
Sbjct:  260 TVTGVEMFRKELDQGEAGDNVGVLLRGTKKEEVERGQVLAQPGTITPHTKFEAEIYVLTKEEGGRHTPFFSGYRPQFYVRTTDVTGTIT-----LPEGVEMVMPGDNVKINAELIAPIALEEGTRFAIREGGRTVGAGVVSKIIE 399          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSL (Elongation factor Tu OS=Geobacter sulfurreducens GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.533e-51
Identity = 97/145 (66.90%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AGDN+G LLRGV++ DI+RG VLAKPG+ITPHTKF A  Y+L KEEGGRH+PFF GYRPQFY RTTDVTG V     D    ++MVMPGD + + + LI P+A ++G+RFAIREGG+TVGAGV+ SIIE
Sbjct:  257 TVTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVLAKPGSITPHTKFKAEAYILTKEEGGRHTPFFNGYRPQFYFRTTDVTGVV-----DLPAGTEMVMPGDNVAVTINLITPIAMDEGLRFAIREGGRTVGAGVVSSIIE 396          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHLP8 (Elongation factor Tu OS=Chlorobaculum parvum (strain NCIB 8327) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.533e-51
Identity = 98/144 (68.06%), Postives = 115/144 (79.86%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMFQKTLDE  AGDN GLLLRGV K  ++RGMV+AKPG+ITPHTKF A VY+LKKEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VELI P+A E+ +RFAIREGG+TVGAG +  I+E
Sbjct:  255 VTGIEMFQKTLDEGQAGDNAGLLLRGVDKEALERGMVIAKPGSITPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLSVDVELIAPIAMEESLRFAIREGGRTVGAGSVTKIVE 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_PELPB (Elongation factor Tu OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 8.532e-51
Identity = 97/144 (67.36%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMFQK LDE  AGDN GLLLRGV K +++RGMV+AKPGTI PHTKF A VY+LKKEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VEL+ P+A ++G+RFAIREGG+TVGAG + +IIE
Sbjct:  255 VTGIEMFQKLLDEGQAGDNAGLLLRGVDKTELERGMVIAKPGTIKPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLGVEVELLAPIAMDEGLRFAIREGGRTVGAGSVTTIIE 393          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_IDILO (Elongation factor Tu OS=Idiomarina loihiensis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 8.532e-51
Identity = 96/145 (66.21%), Postives = 117/145 (80.69%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            TVTGVEMF+K LDE  AG+N+G LLRG ++ D++RG VLAKPGTITPHTKF A VYVL K+EGGRH+PFF GYRPQFY RTTDVTG V     +  E  +MVMPGD +K VV+LI P+A ++G+RFAIREGG+TVGAGV+  I++
Sbjct:  255 TVTGVEMFRKLLDEGRAGENIGALLRGTKRDDVERGQVLAKPGTITPHTKFEAEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGAV-----ELPEGVEMVMPGDNLKFVVDLIAPIAMDEGLRFAIREGGRTVGAGVVSKIMD 394          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHRVO (Elongation factor Tu OS=Chromobacterium violaceum GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 8.532e-51
Identity = 97/144 (67.36%), Postives = 116/144 (80.56%), Query Frame = 1
Query:    7 TVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 438
            T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPGTITPHTKF A VYVL K+EGGRH+PFFA YRPQFY RTTDVTG +S       E  +MVMPGD +++ VELI P+A E+G+RFAIREGG+TVGAGV+  II
Sbjct:  257 TCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLAKPGTITPHTKFEASVYVLSKDEGGRHTPFFANYRPQFYFRTTDVTGAISLA-----EGVEMVMPGDNVEIKVELIAPIAMEEGLRFAIREGGRTVGAGVVAKII 395          
BLAST of CK739762 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTE (Elongation factor Tu OS=Chlorobium tepidum GN=tuf PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 8.532e-51
Identity = 98/144 (68.06%), Postives = 115/144 (79.86%), Query Frame = 1
Query:   10 VTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 441
            VTG+EMFQKTLDE  AGDN GLLLRGV K  ++RGMV+AKPG+ITPHTKF A VY+LKKEEGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + + VELI P+A E+ +RFAIREGG+TVGAG +  I+E
Sbjct:  255 VTGIEMFQKTLDEGQAGDNAGLLLRGVDKNALERGMVIAKPGSITPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDVTGSVT-----LPEGVEMVMPGDNLSIDVELIAPIAMEESLRFAIREGGRTVGAGSVTKIVE 393          
The following BLAST results are available for this feature:
BLAST of CK739762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CALS83.830e-5168.06Elongation factor Tu OS=Caldicellulosiruptor sacch... [more]
EFTU_ANATD3.830e-5168.06Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
EFTU_NAUPA5.002e-5168.06Elongation factor Tu OS=Nautilia profundicola (str... [more]
EFTU_NITSB6.533e-5166.90Elongation factor Tu OS=Nitratiruptor sp. (strain ... [more]
EFTU_GEOSL6.533e-5166.90Elongation factor Tu OS=Geobacter sulfurreducens G... [more]
EFTU_CHLP86.533e-5168.06Elongation factor Tu OS=Chlorobaculum parvum (stra... [more]
EFTU_PELPB8.532e-5167.36Elongation factor Tu OS=Pelodictyon phaeoclathrati... [more]
EFTU_IDILO8.532e-5166.21Elongation factor Tu OS=Idiomarina loihiensis GN=t... [more]
EFTU_CHRVO8.532e-5167.36Elongation factor Tu OS=Chromobacterium violaceum ... [more]
EFTU_CHLTE8.532e-5168.06Elongation factor Tu OS=Chlorobium tepidum GN=tuf ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6152 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739762 ID=CK739762; Name=CK739762; organism=Citrus sinensis; type=EST; length=545bp
AATTTCACTGTAACTGGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGC
AATGGCTGGGGATAATGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTG
ATATTCAGAGAGGGATGGTGTTGGCCAAGCCCGGAACAATTACTCCCCAT
ACTAAGTTCCTTGCCATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAG
GCACTCACCTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCA
CTGATGTGACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAG
TCCAAGATGGTTATGCCTGGTGACCGTATCAAGATGGTTGTGGAGCTTAT
TATGCCAGTGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAG
GAAAGACTGTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTAC
TAGGAACTTTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTT
AAACTTCATATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCT
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