CK739766

Overview
NameCK739766
Unique NameCK739766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:801..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 2.452e-62
Identity = 110/129 (85.27%), Postives = 120/129 (93.02%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMRNDGGF+VI  A+EKL L+H EHIAAYGEGNERRLTGKHETADINT  WGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYV
Sbjct:  214 VWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRNDGGFKVIVDAVEKLKLKHKEHIAAYGEGNERRLTGKHETADINTSSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.463e-62
Identity = 107/129 (82.95%), Postives = 121/129 (93.80%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            LWVARYILERITEI GV++SFDPKPIQGDWNGA AH N+STKSMR DGG ++IK+AI+KL ++H +HIAAYGEGNERRLTGKHETADINTF WGVA+RGAS+RVGRDTEKEGKGYFEDRRP+SNMDPY+
Sbjct:  214 LWVARYILERITEICGVIVSFDPKPIQGDWNGAAAHTNFSTKSMRKDGGLDLIKEAIKKLEVKHKQHIAAYGEGNERRLTGKHETADINTFSWGVADRGASVRVGRDTEKEGKGYFEDRRPSSNMDPYL 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 7.136e-62
Identity = 109/129 (84.50%), Postives = 120/129 (93.02%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG+EVIK AIEKL LRH EHIAAYGEGN+ RLTG+HETADINTF WGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYV
Sbjct:  214 VWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHREHIAAYGEGNDGRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.076e-61
Identity = 110/129 (85.27%), Postives = 114/129 (88.37%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W +RYILERITE AGVVLS DPKPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA INTF WGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYV
Sbjct:  271 IWASRYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYV 399
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 2.295e-60
Identity = 109/129 (84.50%), Postives = 119/129 (92.25%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG+EVIK AIEKL LRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGAS+ VG+ TE+ GKGYFEDRRPASNMDPYV
Sbjct:  214 VWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVAVGQ-TEQNGKGYFEDRRPASNMDPYV 341
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 5.114e-60
Identity = 108/129 (83.72%), Postives = 112/129 (86.82%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W +RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI AYGEGNERRLTGKHETA INTF WGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYV
Sbjct:  270 IWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYV 398
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.488e-59
Identity = 106/129 (82.17%), Postives = 114/129 (88.37%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W ARY+LERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA I+ F WGVANRG SIRVGRDTEK+GKGY EDRRPASNMDPY+
Sbjct:  270 VWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHMEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYI 398
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.538e-59
Identity = 106/129 (82.17%), Postives = 114/129 (88.37%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W ARY+LERITE AGVVL+ DPKPI GDWNGAG H NYSTKSMR +GGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA I++F WGVA+RG SIRVGRDTEKEGKGY EDRRPASNMDPYV
Sbjct:  274 IWCARYLLERITEQAGVVLTLDPKPIDGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVADRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYV 402
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 3.315e-59
Identity = 107/129 (82.95%), Postives = 111/129 (86.05%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W +RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI AYGEGNERRLTGKHETA IN F WGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYV
Sbjct:  272 IWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYV 400
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.645e-58
Identity = 104/129 (80.62%), Postives = 113/129 (87.60%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W ARY+LERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR +GGFEVIKKAI  L LRH EHI+AYGEGNERRLTGKHETA I+ F WGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY+
Sbjct:  272 VWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDQFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYI 400
The following BLAST results are available for this feature:
BLAST of CK739766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA3_HORVU2.452e-6285.27Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLN15_ARATH5.463e-6282.95Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA3_MAIZE7.136e-6284.50Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA4_PHAVU2.076e-6185.27Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA4_MAIZE2.295e-6084.50Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA2_MEDSA5.114e-6083.72Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_BRANA1.488e-5982.17Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA2_DAUCA2.538e-5982.17Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_PEA3.315e-5982.95Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ARATH1.645e-5880.62Glutamine synthetase, chloroplastic/mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6156 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739766 ID=CK739766; Name=CK739766; organism=Citrus sinensis; type=EST; length=388bp
GTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAG
TTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGGAATGGAGCT
GGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGATGGAGGCTT
TGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGCACAGTGAGC
ACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACTGGCAAACAT
GAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCTAACCGTGGGGC
ATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAAGGGTTACTTTG
AGGACAGGAGACCTGCTTCTAACATGGATCCATATGTT
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