CK739766

Overview
NameCK739766
Unique NameCK739766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.806e-58
Identity = 105/129 (81.40%), Postives = 112/129 (86.82%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W++RYILERITE AGVVL+ DPKPIQGDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI+AYGEGNERRLTG HETA I+ F WGVANRG SIRVGRDTE +GKGY EDRRPASNMDPYV
Sbjct:  270 IWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYV 398          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 4.786e-58
Identity = 103/129 (79.84%), Postives = 112/129 (86.82%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W++RYILERITE AGVVL+ DPKPIQGDWNGAG H NYSTK+MR DGGFE IK+AI  L LRH  HI+AYGEGNERRLTGKHETA I TF WGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY+
Sbjct:  265 IWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKTMREDGGFEEIKRAILNLSLRHDLHISAYGEGNERRLTGKHETASIGTFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYI 393          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 1.540e-56
Identity = 103/128 (80.47%), Postives = 109/128 (85.16%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 385
            +W +RYILERITE AGVVL+ DPKPIQGDWNGAG H NYST SMR DGGF+VIKKAI  L LRH  HIAAYGEGNERRLTG HETA I+ F WGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY
Sbjct:  276 IWASRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTLSMREDGGFDVIKKAILNLSLRHDLHIAAYGEGNERRLTGLHETASISDFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPY 403          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA3_LUPAN (Glutamine synthetase nodule isozyme (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 9.047e-49
Identity = 91/102 (89.22%), Postives = 96/102 (94.12%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASI 307
            LWVARYILERITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG+EVIK+AIEKL  RH+EHIAAYGEGNERRLTG+HETADI+TF WGVANRGASI
Sbjct:  214 LWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKQAIEKLEKRHNEHIAAYGEGNERRLTGRHETADISTFSWGVANRGASI 315          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.223e-45
Identity = 83/129 (64.34%), Postives = 98/129 (75.97%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            LW++RY+L R+ E  G+ +SF PKP+QGDWNGAG H N STKSMR  GG + I+ AIEKL  RH EHIA YGE N+ RLTG+HET  I +F  GVANRG SIR+ R   KEG GYFEDRRPASN+DPY+
Sbjct:  206 LWMSRYLLHRVAEEFGIKISFHPKPLQGDWNGAGCHTNVSTKSMREPGGMKHIEAAIEKLAARHKEHIAVYGEDNDMRLTGRHETGSIGSFSSGVANRGCSIRIPRSVAKEGYGYFEDRRPASNIDPYL 334          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.223e-45
Identity = 81/128 (63.28%), Postives = 103/128 (80.47%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 385
            LW+AR++L R++E  G  +SFDPKPI GDWNGAG H N+ST++MR +GG + I+ AI+KL  RH EHIA YGEGN++RLTG+HET  I++F +GVANRGASIR+ R+   +G GYFEDRRPASN DPY
Sbjct:  219 LWLARFLLHRVSEEFGAKVSFDPKPIPGDWNGAGLHTNFSTENMRKEGGMKYIEDAIKKLEARHKEHIAVYGEGNDKRLTGRHETGSIDSFTYGVANRGASIRIPRECGAKGYGYFEDRRPASNADPY 346          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 3.558e-45
Identity = 86/128 (67.19%), Postives = 97/128 (75.78%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 385
            LW+ARY+L R+ E  GV +SF PKP+QGDWNGAGAH NYST +MR  GG + I+ AIEKL  RH EHIA YGE NE RLTG+HET  I TF  GVANRGASIRV R    +G GY EDRRPASN+DPY
Sbjct:  213 LWMARYLLIRVAEQWGVKVSFHPKPLQGDWNGAGAHTNYSTLAMREPGGMKYIEAAIEKLAKRHDEHIAVYGEDNEMRLTGRHETGHIGTFSSGVANRGASIRVPRHVANKGYGYLEDRRPASNIDPY 340          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.926e-45
Identity = 85/128 (66.41%), Postives = 97/128 (75.78%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 385
            LW+ARY+L RI E   V +SF PKP+QGDWNGAG H NYSTK+MR  GG +VI++AIEKL  RH EHIA YGE N+ RLTG+HET  I  F  GVANRGASIRV R    +G GY EDRRPASN+DPY
Sbjct:  213 LWMARYLLVRIAEQWAVKVSFHPKPLQGDWNGAGCHTNYSTKAMREPGGMKVIEEAIEKLSKRHDEHIAVYGEDNDLRLTGRHETGHIGAFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPY 340          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.352e-44
Identity = 83/129 (64.34%), Postives = 98/129 (75.97%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            LW+ARY L R+ E  GV +S  PKP++GDWNGAG H N STK MR  GG + I+ AIEKL  RH+EHI  YG  NE+RLTG+HETA ++TF  GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+
Sbjct:  217 LWIARYFLHRVAEEFGVKVSLHPKPLKGDWNGAGCHTNVSTKLMRAPGGMKYIEDAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMSTFSSGVANRGASIRIPRSVNKEGYGYFEDRRPASNIDPYL 345          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.352e-44
Identity = 80/128 (62.50%), Postives = 99/128 (77.34%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 385
            LW++R++L R+ E  GV +SFDPKPI+GDWNGAG H N ST S R +GG + I+  ++KL  RH EHIA YGEGNE RLTG+HET +I+ F +GVA+RG SIR+ R   K+GKGYFEDRRPASN DPY
Sbjct:  203 LWISRFLLHRVAEEFGVKISFDPKPIKGDWNGAGLHTNVSTTSTRAEGGIKAIESYMKKLEARHVEHIAVYGEGNEERLTGRHETGNIDKFSYGVADRGGSIRIPRQVAKDGKGYFEDRRPASNADPY 330          
The following BLAST results are available for this feature:
BLAST of CK739766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA2_ORYSJ2.806e-5881.40Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNAC_MAIZE4.786e-5879.84Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_HORVU1.540e-5680.47Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA3_LUPAN9.047e-4989.22Glutamine synthetase nodule isozyme (Fragment) OS=... [more]
GLNA_YARLI1.223e-4564.34Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_NEUCR1.223e-4563.28Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_AMAMU3.558e-4567.19Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_HEBCY7.926e-4566.41Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_KLULA1.352e-4464.34Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_EMENI1.352e-4462.50Glutamine synthetase OS=Emericella nidulans GN=gln... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6156 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739766 ID=CK739766; Name=CK739766; organism=Citrus sinensis; type=EST; length=388bp
GTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAG
TTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGGAATGGAGCT
GGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGATGGAGGCTT
TGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGCACAGTGAGC
ACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACTGGCAAACAT
GAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCTAACCGTGGGGC
ATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAAGGGTTACTTTG
AGGACAGGAGACCTGCTTCTAACATGGATCCATATGTT
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