CK739766

Overview
NameCK739766
Unique NameCK739766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:801..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 149.443 bits (376), Expect = 5.149e-36
Identity = 74/132 (56.06%), Postives = 94/132 (71.21%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 385
            LWVAR+IL R+ +  GV+ +FD KPI G+WNGAG H N+STK+MR + G + IK+AIEKL  RH  HI AY    G  N RRLTG H+T++IN F  GVA+R ASIR+ R   +E KGYFE R P++N DP+
Sbjct:  218 LWVARFILHRVCKDFGVIATFDSKPIPGNWNGAGCHTNFSTKTMREENGLKHIKEAIEKLSKRHRYHIRAYDPKGGLDNARRLTGFHKTSNINDFSAGVADRSASIRIPRTVGQEKKGYFEARCPSANCDPF 349          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.436e-35
Identity = 73/134 (54.48%), Postives = 86/134 (64.18%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKP--IQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 385
            LW++RYIL R+ E  GV +S DPKP    GDWNGAG H N+ST  MR  GG   I+ A+  L   H E +  Y    GE N RRLTG+HET+  + F WGVANRG SIR+ R    E KGY EDRRP+SN DPY
Sbjct:  222 LWMSRYILHRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTNFSTAEMRAPGGIAAIEAAMTGLKRTHLEAMKVYDPHGGEDNLRRLTGRHETSSADKFSWGVANRGCSIRIPRQVAAERKGYLEDRRPSSNCDPY 355          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.656e-34
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W+ R++L RI E  GV +SF  KPI GDWNGAGAH N+STK      G++ I    E LG R +EH+  YG+G E RLTGKHETA  N + WG ++RGAS+R+    EK  KG+ EDRRP +NMDPY+
Sbjct:  191 IWLGRWLLHRIAEDYGVEVSFAAKPIPGDWNGAGAHTNFSTKQTME--GWDAIVTCCEALGTRVTEHVTHYGKGIEDRLTGKHETAPWNKYSWGASDRGASVRIPWAVEKAKKGWLEDRRPNANMDPYL 317          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.074e-33
Identity = 69/131 (52.67%), Postives = 91/131 (69.47%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLG--LRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            LWVAR++L R  E   V  + DPKP++GDWNGAGAH N+STK+MR    ++ I  A E LG   +  +H+  YG G + RLTG HETA  N + +GV++RGAS+R+    EK+GKGY EDRRP +N+DPYV
Sbjct:  196 LWVARWLLYRTAEDFDVAATLDPKPVKGDWNGAGAHTNFSTKAMRES--YDAIITAAESLGEGSKPLDHVKNYGAGIDDRLTGLHETAPWNEYSYGVSDRGASVRIPWQVEKDGKGYIEDRRPNANVDPYV 324          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.550e-32
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGL--RHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +WVAR++L R+ E  GV  S D KP +GDWNGAGAH N+ST++MR   G++ I  A E LG   +  EH+  YG G E RLTG HETA  + + +G ++RGAS+R+    E E KGY EDRRP +N+DPYV
Sbjct:  193 MWVARWLLHRVAEEFGVTASLDAKPAKGDWNGAGAHTNFSTRAMRE--GYDPIITACEALGQDDKPLEHVRQYGTGIEDRLTGAHETAPWDAYSYGASDRGASVRIPWQVEVEKKGYIEDRRPNANVDPYV 321          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.202e-30
Identity = 66/130 (50.77%), Postives = 84/130 (64.62%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEG-KGYFEDRRPASNMDPY 385
            +W+ARY++ R+TE  G+ + F  KP+   DWNG+G HAN+ST+ MR  GG E  +  +        +HIA YG  N++RLTGKHETA  N F +GVA+RGASIRV       G KGY EDRRP S  DPY
Sbjct:  194 MWMARYLMLRLTEKYGIDIEFHCKPLGDTDWNGSGMHANFSTEYMRTVGGKEYFEALMAAFDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRVPHSFVNNGYKGYLEDRRPNSQGDPY 323          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 1.604e-29
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 2
Query:    2 LWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD-TEKEGKGYFEDRRPASNMDPY 385
            +W+ARY+L+R+TE  G+ + +  KP+   DWNG+G H N+STK +R  GG E  +  +        +HIA YG  N++RLTGKHETA  N F +GVA+RGASIRV     + + KGY EDRRP S  DPY
Sbjct:  191 IWMARYLLQRLTEKYGIDIEYHCKPLGDTDWNGSGMHCNFSTKYLREVGGKEYFEALMASSDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRVPHSFIKNDYKGYLEDRRPNSQGDPY 320          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.462e-24
Identity = 65/131 (49.62%), Postives = 78/131 (59.54%), Query Frame = 2
Query:    8 VARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGG---FEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRD-TEKEGKGYFEDRRPASNMDPY 385
            VARY+L R+TE  G+ + F  KP+   DWNG+G HAN+ST  +R  GG   FE +  A EK      +HI  YG  N  RLTGKHETA  + F +GVA+RGASIRV          GY EDRR  S  DPY
Sbjct:  196 VARYLLVRLTEKYGIDVEFHCKPLGDTDWNGSGMHANFSTAYLREVGGQDYFEALMAAFEK---NLHDHINVYGPDNHLRLTGKHETAPWDKFSYGVADRGASIRVPHSFVNNAYPGYLEDRRANSQGDPY 323          
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_VITSX (Glutamine synthetase (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.000e-13
Identity = 38/54 (70.37%), Postives = 39/54 (72.22%), Query Frame = 2
Query:  134 RNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANR 295
            +NDGGFEVIKK        H EHIAAYGEGNER     HETADINTF WGVANR
Sbjct:   11 KNDGGFEVIKK--------HKEHIAAYGEGNER-----HETADINTFLWGVANR 51          
The following BLAST results are available for this feature:
BLAST of CK739766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA_CRIGR5.149e-3656.06Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA_CAEEL7.436e-3554.48Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA2_FRAAL1.656e-3453.49Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_STRVR1.074e-3352.67Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY1.550e-3251.91Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_BRAJA7.202e-3050.77Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHILP1.604e-2949.23Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_RHIME3.462e-2449.62Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]
GLNA_VITSX8.000e-1370.37Glutamine synthetase (Fragments) OS=Vitis sp. PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6156 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739766 ID=CK739766; Name=CK739766; organism=Citrus sinensis; type=EST; length=388bp
GTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAG
TTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGGAATGGAGCT
GGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGATGGAGGCTT
TGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGCACAGTGAGC
ACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACTGGCAAACAT
GAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCTAACCGTGGGGC
ATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAAGGGTTACTTTG
AGGACAGGAGACCTGCTTCTAACATGGATCCATATGTT
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