CK739787

Overview
NameCK739787
Unique NameCK739787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length179
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.666e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3 
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  144 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLA 202
[Close]
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.666e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3 
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  144 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLA 202
[Close]
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.666e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3 
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  144 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLA 202
[Close]
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.666e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3 
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  143 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLA 201
[Close]
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.706e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3 
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  143 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLA 201
[Close]
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.706e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3 
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  144 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLA 202
[Close]
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.706e-28
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 3 
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  142 GLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLA 200
[Close]
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.706e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3 
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  143 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLA 201
[Close]
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.137e-27
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 3 
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQS+LAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA
Sbjct:  143 GLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLA 201
[Close]
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.485e-27
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 3 
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSLIHAQSILAIWACQVVLMGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLA
Sbjct:  142 GLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLA 200
The following BLAST results are available for this feature:
BLAST of CK739787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB25_TOBAC6.666e-2894.92Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_PETSP6.666e-2894.92Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_TOBAC6.666e-2894.92Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC6.666e-2894.92Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB24_PETSP8.706e-2894.92Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_PETSP8.706e-2894.92Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB22_TOBAC8.706e-2893.22Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_PETSP8.706e-2894.92Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_WHEAT1.137e-2793.22Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE1.485e-2793.22Chlorophyll a-b binding protein M9, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6177 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739787 ID=CK739787; Name=CK739787; organism=Citrus sinensis; type=EST; length=179bp
GCGGGCTAGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATC
TTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTA
CAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAG
GTGGCAGCTTTGATCCATTGGGTTTGGCT
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