CK739787

Overview
NameCK739787
Unique NameCK739787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length179
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.939e-27
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLA
Sbjct:  142 GLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLA 200          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.308e-27
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA
Sbjct:  140 GLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLA 198          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.308e-27
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA
Sbjct:  133 GLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLA 191          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.308e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GL YLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  141 GLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLA 199          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.643e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA
Sbjct:  143 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLA 201          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.643e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA
Sbjct:  144 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLA 202          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.643e-27
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  138 GLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 196          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.625e-27
Identity = 52/59 (88.14%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLA
Sbjct:  155 GLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLA 213          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.625e-27
Identity = 52/59 (88.14%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLA
Sbjct:  155 GLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLA 213          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.625e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  145 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 203          
The following BLAST results are available for this feature:
BLAST of CK739787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB23_POLMU1.939e-2791.53Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_SOYBN3.308e-2794.92Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_SOYBN3.308e-2794.92Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_HORVU3.308e-2793.22Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB25_NICPL5.643e-2793.22Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_NICPL5.643e-2793.22Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_ORYSJ5.643e-2796.61Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_PYRPY9.625e-2788.14Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY9.625e-2788.14Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB28_PEA9.625e-2793.22Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6177 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739787 ID=CK739787; Name=CK739787; organism=Citrus sinensis; type=EST; length=179bp
GCGGGCTAGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATC
TTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTA
CAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAG
GTGGCAGCTTTGATCCATTGGGTTTGGCT
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