CK739787

Overview
NameCK739787
Unique NameCK739787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length179
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.625e-27
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLG V DPLYPGGSFDPLGLA
Sbjct:  144 GLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLA 202          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.625e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  146 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 204          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.625e-27
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  105 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 163          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.257e-26
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLA
Sbjct:  142 GLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLA 200          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.658e-26
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSIL+IWA QV+LMGAVEGYR+AGGPLGE+ DPLYPGGSFDPLGLA
Sbjct:  141 GLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLA 199          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.390e-25
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGN SLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPL LA
Sbjct:  122 GLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALA 180          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.282e-25
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR+ GGPLGE  DP+YPGG+FDPLGLA
Sbjct:  142 GLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLA 200          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.898e-25
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE  D LYPGG+FDPLGLA
Sbjct:  141 GLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLA 199          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.007e-24
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLYPG +FDPLGLA
Sbjct:   27 GLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLA 85          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.471e-24
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  DPLYPGG+FDPLGLA
Sbjct:  142 GLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLA 200          
The following BLAST results are available for this feature:
BLAST of CK739787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB22_PETSP9.625e-2791.53Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_PEA9.625e-2793.22Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_PEA9.625e-2793.22Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_ORYSJ1.257e-2694.92Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_APIGR3.658e-2688.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN1.390e-2591.53Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_GOSHI5.282e-2586.44Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_SILPR6.898e-2586.44Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_PINSY2.007e-2484.75Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB215_PEA4.471e-2486.44Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6177 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739787 ID=CK739787; Name=CK739787; organism=Citrus sinensis; type=EST; length=179bp
GCGGGCTAGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATC
TTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTA
CAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAG
GTGGCAGCTTTGATCCATTGGGTTTGGCT
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