CK739787
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.839e-24 Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 3 Query: 3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179 GLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLA Sbjct: 142 GLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLA 200
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.839e-24 Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 3 Query: 3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179 GLDYLGNP+L+HAQSILAIWA QVVLMG +EGYR+ GGPLGE DPLYPGG+FDPLGLA Sbjct: 141 GLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLA 199
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23 Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 3 Query: 3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLA 179 GLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGGSFDPLGLA Sbjct: 143 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLA 202
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23 Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 3 Query: 3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLA 179 GLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGGSFDPLGLA Sbjct: 142 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLA 201
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23 Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 3 Query: 3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLA 179 GLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGGSFDPLGLA Sbjct: 143 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLA 202
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23 Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 3 Query: 3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179 GLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLA Sbjct: 142 GLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLA 200
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.456e-23 Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 3 Query: 3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179 GLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLA Sbjct: 114 GLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLA 172
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 8.432e-23 Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 3 Query: 3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179 GLDYLGNP+LIHAQSILA+WA QVVLMG +EGYR+ GGPLGE D +YPGG+FDPLGLA Sbjct: 142 GLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLA 200
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 8.432e-23 Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 3 Query: 3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179 GLDY GNP+LIHAQSILAIWACQVVLMG +EGYR+ GG LGE DPL PGG+FDPLGLA Sbjct: 143 GLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLA 201
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.101e-22 Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 3 Query: 27 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 202 The following BLAST results are available for this feature:
BLAST of CK739787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739787 ID=CK739787; Name=CK739787; organism=Citrus sinensis; type=EST; length=179bpback to top |