CK739787

Overview
NameCK739787
Unique NameCK739787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length179
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.839e-24
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLA
Sbjct:  142 GLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLA 200          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.839e-24
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNP+L+HAQSILAIWA QVVLMG +EGYR+ GGPLGE  DPLYPGG+FDPLGLA
Sbjct:  141 GLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLA 199          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA
Sbjct:  143 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLA 202          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA
Sbjct:  142 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLA 201          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA
Sbjct:  143 GLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLA 202          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLA
Sbjct:  142 GLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLA 200          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.456e-23
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLA
Sbjct:  114 GLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLA 172          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.432e-23
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNP+LIHAQSILA+WA QVVLMG +EGYR+ GGPLGE  D +YPGG+FDPLGLA
Sbjct:  142 GLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLA 200          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.432e-23
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDY GNP+LIHAQSILAIWACQVVLMG +EGYR+ GG LGE  DPL PGG+FDPLGLA
Sbjct:  143 GLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLA 201          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.101e-22
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 3
Query:   27 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 202          
The following BLAST results are available for this feature:
BLAST of CK739787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB24_SOLLC5.839e-2483.05Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_LEMGI5.839e-2483.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ARATH1.699e-2386.67Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL1.699e-2386.67Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_ARATH1.699e-2386.67Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB26_PETSP4.943e-2383.05Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC6.456e-2383.05Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_TOBAC8.432e-2379.66Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_PINTH8.432e-2381.36Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2F_SOLLC1.101e-2296.08Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6177 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739787 ID=CK739787; Name=CK739787; organism=Citrus sinensis; type=EST; length=179bp
GCGGGCTAGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATC
TTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTA
CAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAG
GTGGCAGCTTTGATCCATTGGGTTTGGCT
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