CK739788

Overview
NameCK739788
Unique NameCK739788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig760 contig Csv1_Contig760:479..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739788 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.980e-12
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 2 
Query:    2 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKG 235
            ++V+H L V+LEDLYNG +KKL+L +NVI                    +G GM+V I+ +GP M+QQ+Q  C ECKG
Sbjct:  106 KNVVHQLSVTLEDLYNGITKKLALQKNVICEKCEGIGGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCIECKG 183
[Close]
BLAST of CK739788 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.980e-12
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 2 
Query:    2 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKG 235
            ++V+H L V+LEDLYNG +KKL+L +NVI                    +G GM++ I+ +GP M+QQ+Q  C ECKG
Sbjct:  106 KNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKG 183
[Close]
BLAST of CK739788 vs. ExPASy Swiss-Prot
Match: DNJA1_RAT (DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.158e-11
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 2 
Query:    2 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKG 235
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G
Sbjct:  105 KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQG 182
[Close]
BLAST of CK739788 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.158e-11
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 2 
Query:    2 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKG 235
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G
Sbjct:  104 KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQG 181
[Close]
BLAST of CK739788 vs. ExPASy Swiss-Prot
Match: DNJA1_MOUSE (DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.158e-11
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 2 
Query:    2 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKG 235
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G
Sbjct:  105 KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQG 182
[Close]
BLAST of CK739788 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.158e-11
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 2 
Query:    2 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKG 235
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G
Sbjct:  105 KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQG 182
[Close]
BLAST of CK739788 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.158e-11
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 2 
Query:    2 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKG 235
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G
Sbjct:  105 KNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQG 182
[Close]
BLAST of CK739788 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.513e-11
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 2 
Query:    2 EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKG 235
            ++V+H L V+LEDLYNG ++KL+L +NVI                    +G+GM++ I  +GP M+QQ+Q  C EC+G
Sbjct:  105 KNVVHQLTVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQG 182
The following BLAST results are available for this feature:
BLAST of CK739788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
DNJA4_MOUSE3.980e-1243.59DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJA4_HUMAN3.980e-1242.31DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
DNJA1_RAT1.158e-1139.74DnaJ homolog subfamily A member 1 OS=Rattus norveg... [more]
DNJA1_PONAB1.158e-1139.74DnaJ homolog subfamily A member 1 OS=Pongo abelii ... [more]
DNJA1_MOUSE1.158e-1139.74DnaJ homolog subfamily A member 1 OS=Mus musculus ... [more]
DNJA1_HUMAN1.158e-1139.74DnaJ homolog subfamily A member 1 OS=Homo sapiens ... [more]
DNAJ1_CERAE1.158e-1139.74DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNJA1_BOVIN1.513e-1139.74DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6178 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739788 ID=CK739788; Name=CK739788; organism=Citrus sinensis; type=EST; length=271bp
AGAGGACGTAATCCATCCCCTCAAGGTTTCGTTGGAGGATCTGTACAATG
GGACATCTAAGAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGTGC
AAAGGGAAGGGGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGCCA
GGGATCTGGAATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGATTC
AACAAATGCAGCATCCTTGCAATGAGTGCAAGGGTACCTGGAGAAACAAT
CAATGACAAGGATCGCTGCCC
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