CK739791

Overview
NameCK739791
Unique NameCK739791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.113e-34
Identity = 82/155 (52.90%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            GLS  P+ F +Y+  ELIHARWAMLGA G   PE   K G   G EAVWFK GA +     L+Y G    +   N+V     +++L+G  E YR+  G   E  D L+PG  FDPLGLA DPD FA LKVKEIKNGRLA F+M GFF+QA VTG+
Sbjct:   71 GLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGK 224          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.113e-34
Identity = 80/155 (51.61%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.113e-34
Identity = 79/155 (50.97%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    I    + A+ A +++L+G  E YR+  G   ++ D ++PGG FDPLGLA DPD FA +KVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:   96 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGK 249          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.113e-34
Identity = 81/155 (52.26%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+  A++VL+G  E YR+  G   E  DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:   83 GLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.113e-34
Identity = 78/155 (50.32%), Postives = 104/155 (67.10%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YR+  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:   83 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 79/155 (50.97%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 79/155 (50.97%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 86/158 (54.43%), Postives = 105/158 (66.46%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            GLS  P+ F+K +  E+IH+RWAMLGA G I PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:   82 GLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 235          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 82/155 (52.90%), Postives = 102/155 (65.81%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:   83 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.899e-34
Identity = 79/155 (50.97%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            GLS  P+ F KY+  E+IHARWA+LGA G + PE  + +      E VWFK GA +     L+Y G    I   N+V  +  ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DPD FA LKVKEIKNGRLAMF+  GFF+QA VTG+
Sbjct:   73 GLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGK 227          
The following BLAST results are available for this feature:
BLAST of CK739791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB2_CHLRE1.113e-3452.90Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2G_SOLLC1.113e-3451.61Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2A_PYRPY1.113e-3450.97Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB26_PETSP1.113e-3452.26Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB22_TOBAC1.113e-3450.32Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2A_SPIOL1.454e-3450.97Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC1.454e-3450.97Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_LEMGI1.454e-3454.43Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI1.454e-3452.90Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2_CHLMO1.899e-3450.97Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6181 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739791 ID=CK739791; Name=CK739791; organism=Citrus sinensis; type=EST; length=617bp
TGGGGAAGTACGTGATGTGATATTCTCTGAGAACGGAAGTGTCACTGTAG
TTTACCGAGTCACCTTAAGAGGATCTGATGGAGAGGCACACCGCGAGGCA
ACTGGAACAGTATCATCCAGTGACAGCCGCATCACAGATCCAGTTGCAGA
AAGCTATTATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAAT
ATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCT
GGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCC
TGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACAT
TGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATT
GCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGG
TTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCCACTGG
GATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGGAGATC
AAGAATGGAAGACTTGCCATGTTTGCCATGCTTGGTTTCTTTCTCCAAGC
TTATGTCACAGGTGAAG
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