CK739791
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21 Identity = 59/146 (40.41%), Postives = 80/146 (54.79%), Query Frame = 2 Query: 167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA-LLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 598 GL + P + +Y+ ELIH RWAML G I+PEA W K + G Y G+ +P + ++A E + + E+ R D E K +PGG FDPLG +KDP +F LKVKEIKNGRLA+ A++GF +Q Sbjct: 73 GLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGN--------WVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQ 209
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20 Identity = 62/118 (52.54%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 278 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 KFG EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+ G E D L+PG FDPLGLA DP+ A LKVKEIKNGRLAMF+M GFF+QA VTG+ Sbjct: 9 KFG-----EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 121
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.663e-20 Identity = 59/141 (41.84%), Postives = 84/141 (59.57%), Query Frame = 2 Query: 197 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 +++ ELIH RWAMLG G I EA W G + L++G++ Y G+ +P +L + E+++VG E+ R + LD E +++PGG FDPLGLA DP++ LK+ EIK+ RLAM A L F LQA TG+ Sbjct: 136 RFRECELIHGRWAMLGTLGAIAVEALTGIA--------WQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVLVVGYIEFQR-NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGK 265
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20 Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 2 Query: 83 EAHREATGTVSSSDSRITDPVAESYYPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 EA +AT SS++R+ P +E FGL++ ++ ELIH RWAML G ++ EA W + G + LDG +Y G ++P ++ + E++LVGGAE+YR + + E + +PGG FDPL LA + ++ A LK EIK+ RLAM + G+ +QA TGE Sbjct: 105 EAIVQATPDEVSSENRLA-PYSEV---FGLAR-------FRECELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGE 261
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19 Identity = 69/160 (43.12%), Postives = 89/160 (55.62%), Query Frame = 2 Query: 197 KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 613 K+ AY E+I+ R+AMLGAAG I PE K G A+ WF+TG + G T NY+ N + + E+ L+G AE+ R + L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+LG+F+QA VTG Sbjct: 94 KWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTG 247
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19 Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2 Query: 404 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+ Sbjct: 166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19 Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2 Query: 404 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+ Sbjct: 166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19 Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2 Query: 404 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+ Sbjct: 15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 87
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19 Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2 Query: 404 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+ Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19 Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2 Query: 404 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 ++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+ Sbjct: 164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236 The following BLAST results are available for this feature:
BLAST of CK739791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK739791 ID=CK739791; Name=CK739791; organism=Citrus sinensis; type=EST; length=617bpback to top |