CK739791

Overview
NameCK739791
Unique NameCK739791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21
Identity = 59/146 (40.41%), Postives = 80/146 (54.79%), Query Frame = 2
Query:  167 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA-LLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 598
            GL + P +  +Y+  ELIH RWAML   G I+PEA             W K      + G    Y G+ +P   +  ++A E + +   E+ R     D E K +PGG FDPLG +KDP +F  LKVKEIKNGRLA+ A++GF +Q
Sbjct:   73 GLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGN--------WVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQ 209          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 62/118 (52.54%), Postives = 75/118 (63.56%), Query Frame = 2
Query:  278 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            KFG     EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:    9 KFG-----EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 121          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.663e-20
Identity = 59/141 (41.84%), Postives = 84/141 (59.57%), Query Frame = 2
Query:  197 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            +++  ELIH RWAMLG  G I  EA             W   G + L++G++  Y G+ +P +L   +  E+++VG  E+ R  + LD E +++PGG FDPLGLA DP++   LK+ EIK+ RLAM A L F LQA  TG+
Sbjct:  136 RFRECELIHGRWAMLGTLGAIAVEALTGIA--------WQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVLVVGYIEFQR-NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGK 265          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20
Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 2
Query:   83 EAHREATGTVSSSDSRITDPVAESYYPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            EA  +AT    SS++R+  P +E    FGL++       ++  ELIH RWAML   G ++ EA             W + G + LDG   +Y G ++P ++   +  E++LVGGAE+YR  +  + E + +PGG FDPL LA + ++ A  LK  EIK+ RLAM +  G+ +QA  TGE
Sbjct:  105 EAIVQATPDEVSSENRLA-PYSEV---FGLAR-------FRECELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGE 261          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 69/160 (43.12%), Postives = 89/160 (55.62%), Query Frame = 2
Query:  197 KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 613
            K+ AY E+I+ R+AMLGAAG I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       D  +PGGP F+PLG  KD      LK+KEIKNGRLAM A+LG+F+QA VTG
Sbjct:   94 KWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTG 247          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2
Query:  404 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2
Query:  404 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2
Query:  404 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 87          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2
Query:  404 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 2
Query:  404 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236          
The following BLAST results are available for this feature:
BLAST of CK739791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB11_SOLLC5.365e-2140.41Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB22_PINSY1.195e-2052.54Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB4C_ARATH2.663e-2041.84Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE3.477e-2037.43Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB13_SOLLC1.726e-1943.13Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2F_SOLLC3.845e-1964.38Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.845e-1964.38Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC3.845e-1964.38Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC3.845e-1964.38Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC3.845e-1964.38Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6181 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739791 ID=CK739791; Name=CK739791; organism=Citrus sinensis; type=EST; length=617bp
TGGGGAAGTACGTGATGTGATATTCTCTGAGAACGGAAGTGTCACTGTAG
TTTACCGAGTCACCTTAAGAGGATCTGATGGAGAGGCACACCGCGAGGCA
ACTGGAACAGTATCATCCAGTGACAGCCGCATCACAGATCCAGTTGCAGA
AAGCTATTATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAAT
ATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCT
GGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCC
TGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACAT
TGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATT
GCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGG
TTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCCACTGG
GATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGGAGATC
AAGAATGGAAGACTTGCCATGTTTGCCATGCTTGGTTTCTTTCTCCAAGC
TTATGTCACAGGTGAAG
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