CK739791

Overview
NameCK739791
Unique NameCK739791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 61/173 (35.26%), Postives = 92/173 (53.18%), Query Frame = 2
Query:  104 GTVSSSDSRITDPVAESYYPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            G V  + +   DP +  + P+    +     +++  ELIH RWAML   G I  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM   LGF +QA  TG+
Sbjct:  104 GEVIGTRTEAVDPKSTPFQPYS---EVFGLQRFRECELIHGRWAMLATLGAITVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGK 262          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 61/182 (33.52%), Postives = 95/182 (52.20%), Query Frame = 2
Query:   77 DGEAHREATGTVSSSDSRITDPVAESYYPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            D    +   G V  + +   D  +  + P+    +     +++  ELIH RWAML   G +  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA  TG+
Sbjct:   98 DQNLAKNLAGDVIGTRTEAADAKSTPFQPYS---EVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGK 265          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  380 NLVFAVIAEIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            +L+  +  +++L+G  E YR  N      G DL D+L+PGGPFDPLGLA DPD F  LKVKEIKNGRLAM  MLGF+ QA VTGE
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGE 93          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17
Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 2
Query:  197 KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 613
            ++ AY E+I+ R+AMLGA G I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       +  +PGGPF +PLG  KD      LK+KE+KNGRLAM A+LG+F+Q  VTG
Sbjct:   96 RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTG 249          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  404 EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            +++L+G  E YR+     L   ED L+PGG FDPL    DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 95          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16
Identity = 63/169 (37.28%), Postives = 76/169 (44.97%), Query Frame = 2
Query:  161 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----------------ITNGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 613
            P GL+  P+     Q  EL+H RWAMLGAAG  IPE   K G    P   W+  G      +T   F            I E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KEIKNGRLAM A++G + Q   TG
Sbjct:   90 PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTG 244          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 61/169 (36.09%), Postives = 75/169 (44.38%), Query Frame = 2
Query:  161 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----------------ITNGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 613
            P GL   P+        EL+H+RWAMLGAAG  IPE   K G    P   W+  G      +T   F            + E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KEIKNGRLAM A++G + Q   TG
Sbjct:   90 PLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTG 244          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  161 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            P GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+       D     YF  +  + ++  ++   V +    +  I N G   +D +            +PGG F+PL  A  P Q A  K KE+ NGRLAM A LGF +Q  VTG+
Sbjct:   79 PLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGK 228          
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 53/172 (30.81%), Postives = 80/172 (46.51%), Query Frame = 2
Query:  140 PVAESYYPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616
            P    + P GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G          YF  +  + ++  +++  V +    +  I N              L   +  +PGG F+PL  A   +     K KEI NGRLAM A LGF +Q  VTG+
Sbjct:   71 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRLAMLAFLGFIIQHNVTGK 227          
The following BLAST results are available for this feature:
BLAST of CK739791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
CB4B_ARATH1.908e-1835.26Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4A_ARATH1.908e-1833.52Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB21_EUGGR1.908e-1858.82Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB23_PEA1.615e-1740.00Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_RAPSA2.333e-1658.11Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_SOLLC8.864e-1637.28Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY5.745e-1536.09Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_ARATH6.352e-1434.55Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA4.117e-1330.81Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6181 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739791 ID=CK739791; Name=CK739791; organism=Citrus sinensis; type=EST; length=617bp
TGGGGAAGTACGTGATGTGATATTCTCTGAGAACGGAAGTGTCACTGTAG
TTTACCGAGTCACCTTAAGAGGATCTGATGGAGAGGCACACCGCGAGGCA
ACTGGAACAGTATCATCCAGTGACAGCCGCATCACAGATCCAGTTGCAGA
AAGCTATTATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAAT
ATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCT
GGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCC
TGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACAT
TGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATT
GCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGG
TTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCCACTGG
GATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGGAGATC
AAGAATGGAAGACTTGCCATGTTTGCCATGCTTGGTTTCTTTCTCCAAGC
TTATGTCACAGGTGAAG
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