CK739791
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18 Identity = 61/173 (35.26%), Postives = 92/173 (53.18%), Query Frame = 2 Query: 104 GTVSSSDSRITDPVAESYYPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 G V + + DP + + P+ + +++ ELIH RWAML G I E W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM LGF +QA TG+ Sbjct: 104 GEVIGTRTEAVDPKSTPFQPYS---EVFGLQRFRECELIHGRWAMLATLGAITVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGK 262
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18 Identity = 61/182 (33.52%), Postives = 95/182 (52.20%), Query Frame = 2 Query: 77 DGEAHREATGTVSSSDSRITDPVAESYYPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 D + G V + + D + + P+ + +++ ELIH RWAML G + E W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+ Sbjct: 98 DQNLAKNLAGDVIGTRTEAADAKSTPFQPYS---EVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGK 265
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18 Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 2 Query: 380 NLVFAVIAEIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 +L+ + +++L+G E YR N G DL D+L+PGGPFDPLGLA DPD F LKVKEIKNGRLAM MLGF+ QA VTGE Sbjct: 10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGE 93
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.615e-17 Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 2 Query: 197 KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 613 ++ AY E+I+ R+AMLGA G I PE K G A+ WF+TG + G T NY+ N + + E+ L+G AE+ R + L LE + +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG Sbjct: 96 RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTG 249
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16 Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 2 Query: 404 EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 +++L+G E YR+ L ED L+PGG FDPL DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+ Sbjct: 22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 95
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16 Identity = 63/169 (37.28%), Postives = 76/169 (44.97%), Query Frame = 2 Query: 161 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----------------ITNGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 613 P GL+ P+ Q EL+H RWAMLGAAG IPE K G P W+ G +T F I E+VL+G AE R N L D +PGG FDPLG P + L+ KEIKNGRLAM A++G + Q TG Sbjct: 90 PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTG 244
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15 Identity = 61/169 (36.09%), Postives = 75/169 (44.38%), Query Frame = 2 Query: 161 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----------------ITNGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 613 P GL P+ EL+H+RWAMLGAAG IPE K G P W+ G +T F + E+VL+G AE R N L D +PGG FDPLG P + L+ KEIKNGRLAM A++G + Q TG Sbjct: 90 PLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTG 244
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14 Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 2 Query: 161 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 P GL++ P++ + EL++ RWAMLG AG ++PE F K G PE W+ D YF + + ++ ++ V + + I N G +D + +PGG F+PL A P Q A K KE+ NGRLAM A LGF +Q VTG+ Sbjct: 79 PLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGK 228
BLAST of CK739791 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13 Identity = 53/172 (30.81%), Postives = 80/172 (46.51%), Query Frame = 2 Query: 140 PVAESYYPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 616 P + P GL++ P++ + EL++ RWAMLG AG ++PE F G P+ W+ G YF + + ++ +++ V + + I N L + +PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+ Sbjct: 71 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRLAMLAFLGFIIQHNVTGK 227 The following BLAST results are available for this feature:
BLAST of CK739791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739791 ID=CK739791; Name=CK739791; organism=Citrus sinensis; type=EST; length=617bpback to top |