CK739798

Overview
NameCK739798
Unique NameCK739798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739798_ssr219 microsatellite CK739798_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4134 contig Csv1_Contig4134:69..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE1_MACFA (V-type proton ATPase subunit E 1 OS=Macaca fascicularis GN=ATP6V1E1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 58/118 (49.15%), Postives = 86/118 (72.88%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + Y++KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +    V +D   Y+ LL GL+
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE1_HUMAN (V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 58/118 (49.15%), Postives = 86/118 (72.88%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + Y++KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +    V +D   Y+ LL GL+
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE1_BOVIN (V-type proton ATPase subunit E 1 OS=Bos taurus GN=ATP6V1E1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 58/118 (49.15%), Postives = 86/118 (72.88%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + Y++KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +    V +D   Y+ LL GL+
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_MANSE (V-type proton ATPase subunit E OS=Manduca sexta GN=VHA26 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.186e-25
Identity = 60/118 (50.85%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + Y++KEKQVE++KKI+ S  LN +R+KVL+ ++D V N+++ A K    V +D   Y  LL  LI
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDIKLYSDLLVTLI 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_HETSC (V-type proton ATPase subunit E OS=Heterodera schachtii PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.186e-25
Identity = 57/118 (48.31%), Postives = 83/118 (70.34%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++D DV KQ++ M+ FI QEA EKA EI   AEEEFNIEK +LV+ +++KI + Y++KEKQVE+++KI+ S   N SR+K L+A+DD + N++E A      +S D   Y  +LKGL+
Sbjct:    3 ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGKLVQLQRQKIMEYYEKKEKQVELQRKIQRSNMQNQSRLKCLKARDDHLKNVLEEARANLSKISADRERYPAILKGLL 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_DROME (V-type proton ATPase subunit E OS=Drosophila melanogaster GN=Vha26 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.024e-25
Identity = 58/118 (49.15%), Postives = 87/118 (73.73%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + Y++KEKQVE++KKI+ S  LN +R+KVL+ ++D VS++++ A K    V+++ + Y+ +L  LI
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLI 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE2_HUMAN (V-type proton ATPase subunit E 2 OS=Homo sapiens GN=ATP6V1E2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23
Identity = 55/118 (46.61%), Postives = 80/118 (67.80%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++D DV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + Y++KEKQ+E +KKI  S   N +R+KVL+A++DL+S+++  A      +  D   Y+ LL  L+
Sbjct:    3 LSDVDVKKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLV 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE2_BOVIN (V-type proton ATPase subunit E 2 OS=Bos taurus GN=ATP6V1E2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.474e-23
Identity = 55/118 (46.61%), Postives = 80/118 (67.80%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++D DV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + Y++KEKQ+E +KKI+ S   N +R+KVL+A++DL+S ++  A      +  D   Y+ LL  L+
Sbjct:    3 LSDVDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSTLRNQARLKVLRARNDLISELLNDAKLRLSRIVTDPEFYQGLLDKLV 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE2_MOUSE (V-type proton ATPase subunit E 2 OS=Mus musculus GN=Atp6v1e2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.665e-22
Identity = 53/118 (44.92%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            + D DV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI   +++KEKQ+E +KKI+ S   N +RI VL+A+D+L+  +++ A      +  D   Y+ LL  L+
Sbjct:    3 LTDIDVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMDYFEKKEKQIEQQKKIQLSTMRNQARITVLRARDNLILELLKDAKMRLSRIVSDEEIYQDLLDKLV 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_DICDI (V-type proton ATPase subunit E OS=Dictyostelium discoideum GN=vatE PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.315e-21
Identity = 49/118 (41.53%), Postives = 81/118 (68.64%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            M+D  V+ Q+ QM  FI QEA++KANEI   A +EF  EK ++ + EK KI +EY++K+K +E++KKI  S +LN SR+ VL+ +++ + ++++ A K+   +S D + Y+ +LK LI
Sbjct:    1 MDDTQVNAQLDQMKNFILQEAQDKANEIKTKATQEFTSEKGRIFQNEKIKIIKEYEKKQKLIEVQKKINLSNELNKSRLSVLKVREECLRDVIKEAQKKLATISDDKDKYQTILKNLI 118          
The following BLAST results are available for this feature:
BLAST of CK739798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE1_MACFA1.830e-2649.15V-type proton ATPase subunit E 1 OS=Macaca fascicu... [more]
VATE1_HUMAN1.830e-2649.15V-type proton ATPase subunit E 1 OS=Homo sapiens G... [more]
VATE1_BOVIN1.830e-2649.15V-type proton ATPase subunit E 1 OS=Bos taurus GN=... [more]
VATE_MANSE1.186e-2550.85V-type proton ATPase subunit E OS=Manduca sexta GN... [more]
VATE_HETSC1.186e-2548.31V-type proton ATPase subunit E OS=Heterodera schac... [more]
VATE_DROME2.024e-2549.15V-type proton ATPase subunit E OS=Drosophila melan... [more]
VATE2_HUMAN2.474e-2346.61V-type proton ATPase subunit E 2 OS=Homo sapiens G... [more]
VATE2_BOVIN2.474e-2346.61V-type proton ATPase subunit E 2 OS=Bos taurus GN=... [more]
VATE2_MOUSE4.665e-2244.92V-type proton ATPase subunit E 2 OS=Mus musculus G... [more]
VATE_DICDI2.315e-2141.53V-type proton ATPase subunit E OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6188 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739798 ID=CK739798; Name=CK739798; organism=Citrus sinensis; type=EST; length=434bp
CCTTAGCGATCGAAGAAAGTCGAATCGCTCTTCTCATTTTGATATCAACA
ATCTAATCAAATCAAAAGATCCCGCGAAAATGAACGACGCTGATGTTTCG
AAGCAGATCCAGCAGATGGTGCGGTTTATCCGCCAAGAAGCCGAAGAGAA
AGCCAACGAGATCTCAGTTTCTGCCGAAGAAGAATTCAACATAGAGAAGT
TGCAGCTGGTGGAAGCAGAGAAGAAGAAGATCAGACAAGAGTACCAGCGG
AAAGAGAAGCAAGTCGAAATCAGAAAGAAGATTGAGTACTCCATGCAGCT
GAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAGGATGATTTGGTCAGTA
ATATGATGGAGGCAGCATCAAAGGAGGGTTTGAATGTGAGTCGAGATCAC
AATTCATATAAGAAGCTTTTGAAGGGGCTTATTG
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