CK739798

Overview
NameCK739798
Unique NameCK739798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739798_ssr219 microsatellite CK739798_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4134 contig Csv1_Contig4134:69..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_NEUCR (V-type proton ATPase subunit E OS=Neurospora crassa GN=vma-4 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.087e-18
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++D  V +++++M  FI+QEAEEKA EI + A+EEF IEK +LV  E   I   Y +K KQ ++ ++I  S   N +R++VL A+ +L+  + EAAS +    + D   YK +L+ LI
Sbjct:    7 LSDDQVGQELRKMTAFIKQEAEEKAREIQIKADEEFAIEKSKLVRQETDAIDSAYAKKFKQAQMSQQITRSTMANKTRLRVLGARQELLDEIFEAASAQLGQATHDLGRYKDILRDLI 124          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_CANAL (V-type proton ATPase subunit E OS=Candida albicans GN=VMA4 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 39/118 (33.05%), Postives = 71/118 (60.17%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++D  V  ++ +M  FI +EA+EKA EI + A+EE+ IEK  +V +E   I   Y++K K+  + ++I  S   N +R+++L  +D+++  + + A  E   +++D   YK +L GLI
Sbjct:    3 LSDEQVKSELSKMQAFIEKEAKEKAKEIKLKADEEYEIEKASIVRSETAAIDSTYEQKLKKASLAQQITKSTIGNKTRLRILSTKDEVLHEIFDEAEAELKKITKDKKQYKPVLVGLI 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_SCHPO (V-type proton ATPase subunit E OS=Schizosaccharomyces pombe GN=vma4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.977e-14
Identity = 39/118 (33.05%), Postives = 68/118 (57.63%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++D  V  ++ +MV FI+QEA EKA EI   +EEEF +EK ++V  +   I Q Y  K K+  + +KI  S  LN SR+++L ++  ++ ++     K+   + +  ++Y K +  LI
Sbjct:    3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLI 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_YEAST (V-type proton ATPase subunit E OS=Saccharomyces cerevisiae GN=VMA4 PE=1 SV=4)

HSP 1 Score: 73.559 bits (179), Expect = 3.959e-13
Identity = 40/130 (30.77%), Postives = 74/130 (56.92%), Query Frame = 2
Query:   44 INNLIKSKDPAKMNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            +++ I +  P ++ND     ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+  + ++I  S   N  R+KVL A++  +  + E   ++   ++ + + YK +L+ LI
Sbjct:    1 MSSAITALTPNQVND-----ELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLI 125          
The following BLAST results are available for this feature:
BLAST of CK739798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_NEUCR4.087e-1839.83V-type proton ATPase subunit E OS=Neurospora crass... [more]
VATE_CANAL1.899e-1533.05V-type proton ATPase subunit E OS=Candida albicans... [more]
VATE_SCHPO7.977e-1433.05V-type proton ATPase subunit E OS=Schizosaccharomy... [more]
VATE_YEAST3.959e-1330.77V-type proton ATPase subunit E OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6188 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739798 ID=CK739798; Name=CK739798; organism=Citrus sinensis; type=EST; length=434bp
CCTTAGCGATCGAAGAAAGTCGAATCGCTCTTCTCATTTTGATATCAACA
ATCTAATCAAATCAAAAGATCCCGCGAAAATGAACGACGCTGATGTTTCG
AAGCAGATCCAGCAGATGGTGCGGTTTATCCGCCAAGAAGCCGAAGAGAA
AGCCAACGAGATCTCAGTTTCTGCCGAAGAAGAATTCAACATAGAGAAGT
TGCAGCTGGTGGAAGCAGAGAAGAAGAAGATCAGACAAGAGTACCAGCGG
AAAGAGAAGCAAGTCGAAATCAGAAAGAAGATTGAGTACTCCATGCAGCT
GAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAGGATGATTTGGTCAGTA
ATATGATGGAGGCAGCATCAAAGGAGGGTTTGAATGTGAGTCGAGATCAC
AATTCATATAAGAAGCTTTTGAAGGGGCTTATTG
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