CK739810

Overview
NameCK739810
Unique NameCK739810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.123e-13
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 2
Query:   41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            ++  ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  161 IWATQVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:   40 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 104          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  198 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  189 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
The following BLAST results are available for this feature:
BLAST of CK739810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB21_ARATH5.123e-1341.44Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2D_SOLLC6.691e-1349.33Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC6.691e-1349.33Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC6.691e-1349.33Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2B_PINSY6.691e-1349.33Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_SOLLC6.691e-1349.33Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_TOBAC6.691e-1349.33Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_PETSP6.691e-1349.33Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_NICPL6.691e-1349.33Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC6.691e-1349.33Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6200 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739810 ID=CK739810; Name=CK739810; organism=Citrus sinensis; type=EST; length=529bp
CCCAGCGGGAACATACAACTACTGGGCAGACCCTTACACACTTTTCGTCC
TGGAAATGGCACTCATGGGATTTGCCGAGCACCGGAGATTCCAAGACTGG
GCAAATCCAGGATCAATGGGCAGGCAATACTTCCTCGGATTCGAGAAATA
CTTGGGAGGTTCCGGCGATCCGGCTTACCCTGGAGGACCTCTATTCAACC
CTCTGGGTCTTGGGAAAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAG
GAAGTGAAGAATGGAAGATTGGCAATGTTGGCAATCTTGGGTTACTTTGT
TCAAGGGCTTGTTACATGAGTTGGGCCTTACCAGAACCTATTGGATCACT
TGGCTGATCCTGTCAACAACAATGTTTTGACTAGCCTCAAGTTTCACTGA
GAGAGAAATTTCTTGGTCATTGCTTGGAATTATATATTCCAAGCCTTGTC
ATCCCCCACTCTGTTCTATTCTACTTTCCCATTGTAAAATTATCTATGTG
AAAAGTGAATGTAACTTGGGCGGAAATGA
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