CK739810

Overview
NameCK739810
Unique NameCK739810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.141e-12
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP               D +++ + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  180 YPGGSFDPL----------GLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.141e-12
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  185 YPGGSFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.141e-12
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  188 YPGGSFDPL----------GLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.491e-12
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 2
Query:   41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            ++  ++ LMGF E  R       G +G     G +K Y GG+ DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DH+ADPV NN
Sbjct:  132 IWASQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.491e-12
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 2
Query:   41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            ++ +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DH+ADPV NN
Sbjct:  158 IWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.491e-12
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 2
Query:   41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            ++ +++ LMGF E  R       G +G     G +K Y GG+ DP               D  +  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DH+ADPV NN
Sbjct:  158 IWAVQVVLMGFVEGYR----VGGGPLGE----GLDKVYPGGAFDPL----------GLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 37/75 (49.33%), Postives = 46/75 (61.33%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GG+ DP               D  +  D K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  202 YPGGNFDPL----------GLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GG+ DP               D ++  D K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  189 YPGGTFDPL----------GLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  193 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 257          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.947e-12
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  130 YPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 194          
The following BLAST results are available for this feature:
BLAST of CK739810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB22_SOYBN1.141e-1249.33Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_ORYSJ1.141e-1249.33Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_HORVU1.141e-1249.33Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB25_SOLLC1.491e-1239.29Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_ORYSJ1.491e-1239.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.491e-1239.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY1.947e-1249.33Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE1.947e-1249.33Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_PEA1.947e-1249.33Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_CUCSA1.947e-1249.33Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6200 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739810 ID=CK739810; Name=CK739810; organism=Citrus sinensis; type=EST; length=529bp
CCCAGCGGGAACATACAACTACTGGGCAGACCCTTACACACTTTTCGTCC
TGGAAATGGCACTCATGGGATTTGCCGAGCACCGGAGATTCCAAGACTGG
GCAAATCCAGGATCAATGGGCAGGCAATACTTCCTCGGATTCGAGAAATA
CTTGGGAGGTTCCGGCGATCCGGCTTACCCTGGAGGACCTCTATTCAACC
CTCTGGGTCTTGGGAAAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAG
GAAGTGAAGAATGGAAGATTGGCAATGTTGGCAATCTTGGGTTACTTTGT
TCAAGGGCTTGTTACATGAGTTGGGCCTTACCAGAACCTATTGGATCACT
TGGCTGATCCTGTCAACAACAATGTTTTGACTAGCCTCAAGTTTCACTGA
GAGAGAAATTTCTTGGTCATTGCTTGGAATTATATATTCCAAGCCTTGTC
ATCCCCCACTCTGTTCTATTCTACTTTCCCATTGTAAAATTATCTATGTG
AAAAGTGAATGTAACTTGGGCGGAAATGA
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