CK739812 | Citrus Genome Database

Overview


Name	CK739812
Unique Name	CK739812
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	661

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9569	contig	Csv1_Contig9569:759..1420.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 2.282e-28
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG  L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 4 Score: 53.1434 bits (126), Expect = 2.282e-28
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQLEDGRTL+DYNIQKESTLHLVLRL
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 2.282e-28
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG  L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 4 Score: 53.1434 bits (126), Expect = 2.282e-28
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQLEDGRTL+DYNIQKESTLHLVLRL
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 2.282e-28
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG  L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 4 Score: 53.1434 bits (126), Expect = 2.282e-28
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQLEDGRTL+DYNIQKESTLHLVLRL
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 2.282e-28
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG  L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 4 Score: 53.1434 bits (126), Expect = 2.282e-28
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQLEDGRTL+DYNIQKESTLHLVLRL
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 2.282e-28
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG  L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 4 Score: 53.1434 bits (126), Expect = 2.282e-28
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQLEDGRTL+DYNIQKESTLHLVLRL
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 2.282e-28
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG  L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 4 Score: 53.1434 bits (126), Expect = 2.282e-28
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQLEDGRTL+DYNIQKESTLHLVLRL
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 2.282e-28
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG  L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 4 Score: 53.1434 bits (126), Expect = 2.282e-28
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQLEDGRTL+DYNIQKESTLHLVLRL
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 2.282e-28
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG  L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 4 Score: 53.1434 bits (126), Expect = 2.282e-28
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQLEDGRTL+DYNIQKESTLHLVLRL
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 2.282e-28
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG  L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 4 Score: 53.1434 bits (126), Expect = 2.282e-28
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQLEDGRTL+DYNIQKESTLHLVLRL
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 92.4337 bits (228), Expect = 2.282e-28
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG  L
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 4 Score: 53.1434 bits (126), Expect = 2.282e-28
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQLEDGRTL+DYNIQKESTLHLVLRL
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRL 73

The following BLAST results are available for this feature:

BLAST of CK739812 vs. ExPASy Swiss-Prot

BLAST of CK739812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
UBIQ_RABIT	1.666e-34	96.05	Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1	[more]
UBIQ_PONPY	1.666e-34	96.05	Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2	[more]
UBIQ_PLUXY	1.666e-34	96.05	Ubiquitin OS=Plutella xylostella PE=3 SV=1	[more]
UBIQ_PIG	1.666e-34	96.05	Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1	[more]
UBIQ_PANTR	1.666e-34	96.05	Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2	[more]
UBIQ_OPHHA	1.666e-34	96.05	Ubiquitin OS=Ophiophagus hannah PE=3 SV=1	[more]
UBIQ_MOUSE	1.666e-34	96.05	Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1	[more]
UBIQ_MANSE	1.666e-34	96.05	Ubiquitin OS=Manduca sexta PE=3 SV=1	[more]
UBIQ_MACFA	1.666e-34	96.05	Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=...	[more]
UBIQ_ICTPU	1.666e-34	96.05	Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_6202 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739812 ID=CK739812; Name=CK739812; organism=Citrus sinensis; type=EST; length=661bp
AAAACCCTGACCGGTAAGACTATAACTTTGGAGGTTGAAAGCTCTGACAC
GATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTG
ATCAACAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACT
CTTGCTGACTACAACATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCG
TCTCCGTGGTGGCATGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAA
TTACTCTTGAGGTTGAAAGTTCTGACACCATTGACAACGTGAAAGCAAAA
ATTCAAGACAAGGAGGGTATCCCACCAGATCAGCAGAGGCTCATTTTTGC
TGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACATCCAGA
AAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTATGCAGATT
TTTGTGAAGACACTCACTGGGAAAACCATCACGTTGGAGGTTGAGAGTTC
GGACACAATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTC
CCCCAGACCAGCAGAGGTTGATCTTTGCTGGAAACAACTTGAGGATGGAA
GGACTCTTGCTGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTG
CTCCGACTCCG