CK739812 | Citrus Genome Database

Overview


Name	CK739812
Unique Name	CK739812
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	661

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9569	contig	Csv1_Contig9569:759..1420.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

HSP 2 Score: 93.9745 bits (232), Expect = 7.514e-19
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    6 KTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

HSP 3 Score: 65.0846 bits (157), Expect = 1.267e-13
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAG  +
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQM 50

HSP 4 Score: 30.8018 bits (68), Expect = 1.267e-13
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQ+ D +T ADY +   S LHLVL L
Sbjct:   48 KQMNDDKTAADYKVLGGSVLHLVLAL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.159e-19
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 1

Query:  220 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 444
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77

HSP 2 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 216
            KTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:    6 KTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77

HSP 3 Score: 65.0846 bits (157), Expect = 1.646e-13
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1

Query:  448 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AG  L
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQL 50

HSP 4 Score: 30.4166 bits (67), Expect = 1.646e-13
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQL D +T  DY I+  S LHLVL L
Sbjct:   48 KQLADDKTAKDYAIEGGSVLHLVLAL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 62.003 bits (149), Expect = 1.030e-12
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNLRME 600
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++G  +  E
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE 53

HSP 4 Score: 30.8018 bits (68), Expect = 1.030e-12
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQ+ D +T ADY I   S LHLVL L
Sbjct:   48 KQMNDEKTAADYKILGGSVLHLVLAL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 62.003 bits (149), Expect = 1.030e-12
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNLRME 600
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++G  +  E
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE 53

HSP 4 Score: 30.8018 bits (68), Expect = 1.030e-12
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQ+ D +T ADY I   S LHLVL L
Sbjct:   48 KQMNDEKTAADYKILGGSVLHLVLAL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 62.003 bits (149), Expect = 1.030e-12
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNLRME 600
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++G  +  E
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE 53

HSP 4 Score: 30.8018 bits (68), Expect = 1.030e-12
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQ+ D +T ADY I   S LHLVL L
Sbjct:   48 KQMNDEKTAADYKILGGSVLHLVLAL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 62.003 bits (149), Expect = 1.030e-12
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNLRME 600
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++G  +  E
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE 53

HSP 4 Score: 30.8018 bits (68), Expect = 1.030e-12
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQ+ D +T ADY I   S LHLVL L
Sbjct:   48 KQMNDEKTAADYKILGGSVLHLVLAL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 3 Score: 62.003 bits (149), Expect = 1.030e-12
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNLRME 600
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++G  +  E
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE 53

HSP 4 Score: 30.8018 bits (68), Expect = 1.030e-12
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQ+ D +T ADY I   S LHLVL L
Sbjct:   48 KQMNDEKTAADYKILGGSVLHLVLAL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76

HSP 2 Score: 90.5077 bits (223), Expect = 8.308e-18
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            +TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    6 RTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76

HSP 3 Score: 61.2326 bits (147), Expect = 1.338e-12
Identity = 24/50 (48.00%), Postives = 39/50 (78.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ G  L
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQL 50

HSP 4 Score: 31.187 bits (69), Expect = 1.338e-12
Identity = 15/26 (57.69%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQL D +T  DY I+  S LHLVL L
Sbjct:   48 KQLADDKTAHDYKIEAGSVLHLVLAL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 441
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76

HSP 2 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 213
            KTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    6 KTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76

HSP 3 Score: 59.6918 bits (143), Expect = 8.361e-12
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ G  L
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQL 50

HSP 4 Score: 30.0314 bits (66), Expect = 8.361e-12
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQL D  T   YN+++ S LHLVL L
Sbjct:   48 KQLADDLTAKHYNLERGSVLHLVLAL 73

[Close]

BLAST of CK739812 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1

Query:  214 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 444
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77

HSP 2 Score: 86.6557 bits (213), Expect = 1.200e-16
Identity = 38/72 (52.78%), Postives = 55/72 (76.39%), Query Frame = 1

Query:    1 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 216
            KTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    6 KTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77

HSP 3 Score: 60.4622 bits (145), Expect = 3.092e-11
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:  442 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGNNL 591
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF G  +
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQM 50

HSP 4 Score: 27.335 bits (59), Expect = 3.092e-11
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 3

Query:  582 KQLEDGRTLADYNIQKESTLHLVLRL 659
            KQ+ D +  ++Y+I+  S LHLVL L
Sbjct:   48 KQMGDDKPASEYSIEGGSVLHLVLAL 73

The following BLAST results are available for this feature:

BLAST of CK739812 vs. ExPASy Swiss-Prot

BLAST of CK739812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
NEDD8_CAEEL	8.876e-20	60.53	NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1	[more]
RUB2_ARATH	1.159e-19	61.33	NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN...	[more]
NEDD8_RAT	1.282e-18	56.58	NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1	[more]
NEDD8_RABIT	1.282e-18	56.58	NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1	[more]
NEDD8_MOUSE	1.282e-18	56.58	NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2	[more]
NEDD8_HUMAN	1.282e-18	56.58	NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1	[more]
NEDD8_BOVIN	1.282e-18	56.58	NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1	[more]
RUB3_ORYSJ	1.674e-18	53.95	NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap...	[more]
RUB3_ARATH	1.085e-17	55.26	NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN...	[more]
NEDD8_DICDI	1.417e-17	53.25	NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6202 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739812 ID=CK739812; Name=CK739812; organism=Citrus sinensis; type=EST; length=661bp
AAAACCCTGACCGGTAAGACTATAACTTTGGAGGTTGAAAGCTCTGACAC
GATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTG
ATCAACAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACT
CTTGCTGACTACAACATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCG
TCTCCGTGGTGGCATGCAGATCTTTGTGAAAACCCTCACCGGAAAAACAA
TTACTCTTGAGGTTGAAAGTTCTGACACCATTGACAACGTGAAAGCAAAA
ATTCAAGACAAGGAGGGTATCCCACCAGATCAGCAGAGGCTCATTTTTGC
TGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAACATCCAGA
AAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTGGTGGTATGCAGATT
TTTGTGAAGACACTCACTGGGAAAACCATCACGTTGGAGGTTGAGAGTTC
GGACACAATTGACAATGTGAAGGCTAAGATCCAGGATAAGGAGGGGATTC
CCCCAGACCAGCAGAGGTTGATCTTTGCTGGAAACAACTTGAGGATGGAA
GGACTCTTGCTGATTACAACATCCAGAAGGAGTCCACTCTGCATCTTGTG
CTCCGACTCCG