CK739816

Overview
NameCK739816
Unique NameCK739816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9673 contig Csv1_Contig9673:18..525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_THEON (Translation initiation factor 6 OS=Thermococcus onnurineus (strain NA1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.277e-12
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 1
Query:  121 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE---ERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            +L FENS  +GV+   T+   L+  G  E         L   +P+++TSI  +RI+G    GN N +++P    D EL+H++N L +  +  RIE     L+A GN I  ND  AL      RE  + + D+
Sbjct:    5 KLDFENSPYLGVYGTATDRVALIREGLGEKKLEVLREVLK--VPLIETSIMKSRIVGVFAAGNSNAIVVPWYIWDAELEHIQNELNELDIDMRIEPFQSTLTAFGNLILANDKAALISVKFTREEAKKLEDI 134          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_PYRKO (Translation initiation factor 6 OS=Pyrococcus kodakaraensis GN=eif6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.625e-12
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  121 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            RL FENS  +GV+ + T+   L+  G  E         L   +P+++TSI  +RI+G    GN N +++P    D EL+ ++ +L +    + V   + RL+ALGN I  ND  AL   +  RE    I ++
Sbjct:    5 RLDFENSPYLGVYGRATDRVLLLREGLGEKKLEVLREVLK--VPIIETSIMKSRIVGIFAAGNSNAIIVPWYIWDAELERIKTALNEFGIDMDVVPFKSRLTALGNLILTNDKAALVSKEFTREEANAIGEI 134          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_NATPD (Translation initiation factor 6 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 45/128 (35.16%), Postives = 62/128 (48.44%), Query Frame = 1
Query:  121 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIAD 504
            R     S  VGVF+  T+ + LV     ES  S FE EL   +  V T+I G+  +G L VGN+NGLL+    TD+E   L       VV   +   ++A GN +  N+  A  H DL R+    I +
Sbjct:    3 RAALSGSSYVGVFATATDEYLLVRPDIEESLQSEFETELD--VTAVPTTIAGSGTVGSLAVGNENGLLVTERVTDRERDRLETETGLPVV--ELPGNINAAGNVVLANNEGAFVHPDLSRDALSAIEE 126          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  121 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            RL FENS  +GVF   T+   LV  G  E         L   +PV++ SI  +RIIG L  GN N +L+P    D E++ ++++  +  +   I     + +ALGN I  ND  AL      R+  + I D+
Sbjct:    5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAKFSRDEAKEIGDI 134          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_PYRHO (Translation initiation factor 6 OS=Pyrococcus horikoshii GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 42/132 (31.82%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  121 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            RL FENS  +GVF   T+   L+  G  E         L   +PV++ S+  +RIIG L  GN N ++LP    D E++ ++ +L +    + V     + +ALGN I  ND  AL      R+  + I ++
Sbjct:    5 RLDFENSPYLGVFGVATDRVVLIREGLQEKKLEVIRETLK--VPVIEVSVMKSRIIGTLATGNSNAIILPWYVWDAEIERIKKALSEYGIDMEVVPFRSKYTALGNLILTNDKAALVSAKFSRKEAQEIGEI 134          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.288e-11
Identity = 44/126 (34.92%), Postives = 63/126 (50.00%), Query Frame = 1
Query:  121 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEII 498
            R  F  S  VGVF++ T+   L+     +       AEL   IP V T+IGG+  +G L  GN+NG+L+    T +E + +  +    V V  +  R++A GN I  ND+ A  H DL  E  E I
Sbjct:    3 RASFAGSPYVGVFARATDDVLLLRSDVDDDTADAMAAELD--IPAVATTIGGSGTVGALATGNENGILVTSNVTMREKEAIETTA--SVSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESI 124          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_THEGJ (Translation initiation factor 6 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.608e-11
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  121 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            RL FENS  +GV+   T+   ++  G  E   +T    L   +P+++TS+  +RI+G    GN N L++P    D EL  +   L +    + V   + RL+A GN I  ND  AL   D  RE    I D+
Sbjct:    5 RLDFENSPYLGVYGFATDRVAVIREGLGEKKLATLREVLK--VPLIETSVMKSRIVGIFVAGNSNALIVPWYIWDAELDFINAQLREYGIDMEVVPFQSRLTAFGNLILANDKGALVSKDFTREEARKIEDI 134          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_PYRFU (Translation initiation factor 6 OS=Pyrococcus furiosus GN=eif6 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.566e-11
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 1
Query:  121 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVV---VQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            +L FENS  +GVF   T+   L+  G  E         L   +PVV+ S+  +RIIG L  GN N +++P    D EL+ ++N+  +  +   V   + + +ALGN I  ND  AL  +   RE  + I D+
Sbjct:    5 KLDFENSPYLGVFGIATDKVVLIREGLQEKKLEVIREVLK--VPVVEASLMKSRIIGVLGAGNSNAIIVPWYVWDSELEKIKNAFREYGIDTEVVPFQTKYTALGNLILTNDKGALVSSKFSREEAKKIGDI 134          
The following BLAST results are available for this feature:
BLAST of CK739816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
IF6_THEON2.277e-1233.33Translation initiation factor 6 OS=Thermococcus on... [more]
IF6_PYRKO6.625e-1232.58Translation initiation factor 6 OS=Pyrococcus koda... [more]
IF6_NATPD8.652e-1235.16Translation initiation factor 6 OS=Natronomonas ph... [more]
IF6_PYRAB2.517e-1133.33Translation initiation factor 6 OS=Pyrococcus abys... [more]
IF6_PYRHO3.288e-1131.82Translation initiation factor 6 OS=Pyrococcus hori... [more]
IF6_HALWD3.288e-1134.92Translation initiation factor 6 OS=Haloquadratum w... [more]
IF6_THEGJ5.608e-1133.33Translation initiation factor 6 OS=Thermococcus ga... [more]
IF6_PYRFU9.566e-1133.33Translation initiation factor 6 OS=Pyrococcus furi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6206 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739816 ID=CK739816; Name=CK739816; organism=Citrus sinensis; type=EST; length=508bp
TGTACATGTTCGGTGGCTAACAGAAAAATCGAATTTGTATGTTATTCTTG
CAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTT
AATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTT
GGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGG
TTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTTATTC
CTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGT
GTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGA
GCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCAGCGTA
TTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCAT
GTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGC
AGATGTTC
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