CK739819

Overview
NameCK739819
Unique NameCK739819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: SAP9_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Arabidopsis thaliana GN=SAP9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.068e-18
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  128 NRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVR 310
            NRC  C +KVG+ GF+C+CG  FCGEHRY + HDCS+D+K  GR  IA+ NPV+KA KI R
Sbjct:  115 NRCLCCNKKVGIMGFKCKCGSTFCGEHRYPETHDCSFDFKEVGRGEIAKANPVVKADKIQR 175          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: SAP4_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.395e-18
Identity = 36/62 (58.06%), Postives = 50/62 (80.65%), Query Frame = 2
Query:  128 NRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 313
            NRC+ CR++VGLTGF CRCG  FCG HRY + H C++D+KSAGR+ IA+ NP++ AAK+ ++
Sbjct:  100 NRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: SAP3_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Oryza sativa subsp. japonica GN=SAP3 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  110 VEKRV-VNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKI 304
            VEK+   NRC+ C++KVGL GF CRCG  +CG HRY ++H C +D+K A RDAIAR NP+IK  K+
Sbjct:  286 VEKKAPANRCASCKKKVGLLGFACRCGATYCGTHRYPEKHACGFDFKGASRDAIARANPLIKGEKL 351          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: SAP1_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana GN=SAP1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.822e-18
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  116 KRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 313
            K    RC  C +KVG+TGF+CRCG  FCG HRY + H+C +D+K   R+AIA+ NPV+KA K+ R+
Sbjct:  103 KSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: ZFAN6_RAT (AN1-type zinc finger protein 6 OS=Rattus norvegicus GN=Zfand6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.301e-18
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  116 KRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 313
            K+  NRC  CR+KVGLTGF CRCG ++CG HRYSD H+CSY+YK+   + I +ENPV+   KI ++
Sbjct:  158 KQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: ZFAN6_PONAB (AN1-type zinc finger protein 6 OS=Pongo abelii GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.301e-18
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  116 KRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 313
            K+  NRC  CR+KVGLTGF CRCG ++CG HRYSD H+CSY+YK+   + I +ENPV+   KI ++
Sbjct:  143 KQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: ZFAN6_MOUSE (AN1-type zinc finger protein 6 OS=Mus musculus GN=Zfand6 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.301e-18
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  116 KRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 313
            K+  NRC  CR+KVGLTGF CRCG ++CG HRYSD H+CSY+YK+   + I +ENPV+   KI ++
Sbjct:  158 KQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: ZFAN6_HUMAN (AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.301e-18
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  116 KRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 313
            K+  NRC  CR+KVGLTGF CRCG ++CG HRYSD H+CSY+YK+   + I +ENPV+   KI ++
Sbjct:  143 KQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.301e-18
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  116 KRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 313
            K+  NRC  CR+KVGLTGF CRCG ++CG HRYSD H+CSY+YK+   + I +ENPV+   KI ++
Sbjct:  143 KQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: SAP12_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica GN=SAP12 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.655e-17
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  128 NRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVR 310
            NRC  CR+KVGL GF CRCG  FC  HR++D+H C++D+K + R+ IA+ENP+I A KI +
Sbjct:  163 NRCVACRKKVGLLGFECRCGGTFCSTHRHADKHACTFDFKKSDREKIAKENPLIVAPKITK 223          
The following BLAST results are available for this feature:
BLAST of CK739819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SAP9_ARATH1.068e-1860.66Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ARATH1.395e-1858.06Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP3_ORYSJ1.822e-1857.58Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ARATH1.822e-1853.03Zinc finger A20 and AN1 domain-containing stress-a... [more]
ZFAN6_RAT5.301e-1856.06AN1-type zinc finger protein 6 OS=Rattus norvegicu... [more]
ZFAN6_PONAB5.301e-1856.06AN1-type zinc finger protein 6 OS=Pongo abelii GN=... [more]
ZFAN6_MOUSE5.301e-1856.06AN1-type zinc finger protein 6 OS=Mus musculus GN=... [more]
ZFAN6_HUMAN5.301e-1856.06AN1-type zinc finger protein 6 OS=Homo sapiens GN=... [more]
ZFAN6_BOVIN5.301e-1856.06AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
SAP12_ORYSJ7.655e-1755.74Zinc finger A20 and AN1 domain-containing stress-a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6209 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739819 ID=CK739819; Name=CK739819; organism=Citrus sinensis; type=EST; length=477bp
GAGAAATCTTTGAGATCTCGGCCTATCATCCGGTCTGGGTCATCCGATGC
TGCCGGTACGACCGGTCAAAATCAGGAGTTGACGGATCGGCATGAGAAGA
TAAGCCAACGTAGAGAAACGAGTTGTGAATCGGTGCTCCGGTTGTCGACG
AAAGGTTGGATTGACCGGATTTAGATGTCGCTGCGGGGAGCTGTTCTGCG
GCGAACATCGGTACTCCGATCGTCACGATTGCAGCTATGATTATAAATCG
GCCGGTCGCGACGCCATCGCGAGAGAAAATCCGGTGATCAAAGCTGCCAA
GATCGTTAGAGTTTGAAAGCTTAATTTGAAAACACGATTATAAAGGTCAA
AAATTCAGATCAATTTATACACATCATGAAACGATGTCATTTCGCCAGAT
CTCTTCCTCAGGAATATGGTGATCAAAGGATCGAAAGAGGGTTTTAGAGA
GAGAGTTGATCAGATTTATGAATTGTT
back to top