CK739819

Overview
NameCK739819
Unique NameCK739819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739819_ssr446 microsatellite CK739819_ssr446:446..455. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12329 contig Csv1_Contig12329:389..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: SAP10_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.705e-16
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  110 VEKRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVR 310
            V+KR   RC  C+RKVG+ GF+CRCG +FCG HRY + H C +DYK +GR A+A + P+I+A K+ R
Sbjct:   66 VKKR---RCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKLQR 129          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.216e-15
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  128 NRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 313
            NRC  CR+KVGL GF CRCG +FCG H       C++DYK+AGR+AIAR NP++ A KI ++
Sbjct:   97 NRCKACRKKVGLLGFPCRCGGMFCGAHA------CAFDYKAAGREAIARHNPLVVAPKINKI 152          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: SAP8_ARATH (Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana GN=SAP8 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.556e-14
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 2
Query:  143 CRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 313
            C++KVGL GF CRCG LF   HRY + H C  DYKSA  D +A++NPV+K  K+ R+
Sbjct:   69 CKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVKGDKLFRL 125          
BLAST of CK739819 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.035e-13
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  113 EKRVVNRCSGCRRKVGL-TGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 313
            +K+  N C  C +K GL + + CRCG  FC  HRY++ H C+YDYKSAGR  +   NPV+ A K+ ++
Sbjct:  660 KKKTTNHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727          
The following BLAST results are available for this feature:
BLAST of CK739819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SAP10_ARATH1.705e-1653.73Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP10_ORYSJ3.216e-1556.45Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ARATH3.556e-1454.39Putative zinc finger A20 and AN1 domain-containing... [more]
ANUB1_HUMAN1.035e-1345.59AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6209 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739819 ID=CK739819; Name=CK739819; organism=Citrus sinensis; type=EST; length=477bp
GAGAAATCTTTGAGATCTCGGCCTATCATCCGGTCTGGGTCATCCGATGC
TGCCGGTACGACCGGTCAAAATCAGGAGTTGACGGATCGGCATGAGAAGA
TAAGCCAACGTAGAGAAACGAGTTGTGAATCGGTGCTCCGGTTGTCGACG
AAAGGTTGGATTGACCGGATTTAGATGTCGCTGCGGGGAGCTGTTCTGCG
GCGAACATCGGTACTCCGATCGTCACGATTGCAGCTATGATTATAAATCG
GCCGGTCGCGACGCCATCGCGAGAGAAAATCCGGTGATCAAAGCTGCCAA
GATCGTTAGAGTTTGAAAGCTTAATTTGAAAACACGATTATAAAGGTCAA
AAATTCAGATCAATTTATACACATCATGAAACGATGTCATTTCGCCAGAT
CTCTTCCTCAGGAATATGGTGATCAAAGGATCGAAAGAGGGTTTTAGAGA
GAGAGTTGATCAGATTTATGAATTGTT
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