CK739823

Overview
NameCK739823
Unique NameCK739823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.375e-12
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  108 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK 278
            V  AI+CG V  SLAPC  +L  GG   PP CC+GV++LN  A+TTPDRQ AC C++
Sbjct:   21 VDAAISCGTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQ 76          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.375e-12
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  120 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR 299
            +TCGQV  +LA CI FL+ GG   PP CC+GV+++  ++RTT DR+A C+CLK A G +R
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR 59          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.345e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 3
Query:  117 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNC 272
            AI+CGQV++++ PC+ + R  G  P   C SGVRSLN AARTT DR+AACNC
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNC 52          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.063e-12
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  105 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR 299
            P   +++CG+VT+ LAPC+P+L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  +I+
Sbjct:   20 PHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIK 82          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.000e-12
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  105 PVT--NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRA 284
            P+T   A+TCG V +++APCI ++  GG  P   CC+GV  LN  ARTTPDRQ AC CL+ A
Sbjct:   20 PITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETA 80          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.824e-12
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  105 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR 299
            P   A++CGQV + LAPC+P+L+  GR P   CC GV+ L GAA++  DR+ AC CLK A   I+
Sbjct:   20 PHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIK 82          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.912e-12
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 3
Query:  117 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYG 290
            AITCGQV+++L PC  + +  G  P   CCSGV+ L G AR+T D+QA C CLK   G
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAG 83          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.912e-12
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  117 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI 296
            A++CGQV  +L PCI ++  GG   P  CC+GVRSL   A+TT DRQ+ CNCLK+A   I
Sbjct:   30 AVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGI 88          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.164e-11
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  120 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR 299
            ITCG V++ LAPCI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A   I+
Sbjct:   28 ITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIK 85          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.164e-11
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  117 AITCGQVTASLAPCIPFLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRA 284
            A+TC  VT +L PC+ +L+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSA 57          
The following BLAST results are available for this feature:
BLAST of CK739823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
NLTP3_ARATH1.375e-1256.14Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP1_PHAAU1.375e-1253.33Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP_ELECO2.345e-1259.62Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP2_SOLLC3.063e-1249.23Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTPA_BRAOT4.000e-1253.23Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP2_TOBAC6.824e-1249.23Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP8_HORVU8.912e-1251.72Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP3_PRUDU8.912e-1253.33Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP_SPIOL1.164e-1153.33Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_AMACA1.164e-1154.39Non-specific lipid-transfer protein OS=Amaranthus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6213 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739823 ID=CK739823; Name=CK739823; organism=Citrus sinensis; type=EST; length=301bp
GAACCTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTC
ATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGAC
TGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGG
CTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCA
TGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGA
CCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCG
G
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