CK739825

Overview
NameCK739825
Unique NameCK739825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.106e-16
Identity = 51/156 (32.69%), Postives = 74/156 (47.44%), Query Frame = 1
Query:   85 SDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXX--VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            +D + LQD C+ADL+  + +NG+PCK  + V                       AVT  +V   P +NT GVS+ R+D   GG+NPPH HPR +EA                    SK +  G VF+ P+AL+H        +PA+ +  F++Q P
Sbjct:   22 ADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHVNKGDVFVFPKALLHFQQNP-NKAPASVLAAFDSQLP 176          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.056e-16
Identity = 54/158 (34.18%), Postives = 75/158 (47.47%), Query Frame = 1
Query:   82 ASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFK-RAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTE--AGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            ASDP  LQD+C+AD  + + +NG  CK   +V                   +  AVT  +V   P +NT G+SL R+D  + G+NPPHTHPR TE    +                 F+KV+  G VF+ P+ LVH       T+ A  I   ++QNP
Sbjct:   28 ASDPSHLQDLCVADKASTVRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTAVNVAQVPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNPENKLFTKVINKGDVFVFPKGLVHFQFN-YGTTDAVAIVALSSQNP 184          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.180e-15
Identity = 56/162 (34.57%), Postives = 71/162 (43.83%), Query Frame = 1
Query:   82 ASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKR--AVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTE-----AGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            ASDP  LQD C+AD  + + +NGF CK    V                 V  +  AVT   V   P +NT G+S  R+D    G NPPHTHPR TE      G                  F+K+L PG VF+ P+ L+H         PA  I   ++QNP
Sbjct:   27 ASDPSQLQDFCVADKLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNN-GAVPAVAIAALSSQNP 187          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.180e-15
Identity = 56/163 (34.36%), Postives = 76/163 (46.63%), Query Frame = 1
Query:   85 SDPDPLQDVCIADLN--------APISINGFPCKPASNVXXXXXXXXXXXXXXXXXV-FKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            +DP+P+QD C+A +         A  +  GFPCKPAS V                   F   VT  +   FP +NT GVS+ R+DL  GG+NP H+HPR TE                   F+SKVL  G  F++PR ++H    +   + A  I  FN+Q P
Sbjct:   25 ADPEPVQDFCVAVVPRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVA-AQVITAFNSQMP 186          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.485e-15
Identity = 46/150 (30.67%), Postives = 70/150 (46.67%), Query Frame = 1
Query:  100 LQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFG-DVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            LQDVC+ADL+  + +NG+ CK ++ +                     +V  G +V   P +NT G+S+ R+D    G+NPPH HPR +E                     +K L  G VF  P+ L+H   K +  SPA+ +  F++Q P
Sbjct:   25 LQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLIAKNLNKGDVFTFPKGLIHF-QKNIANSPASVLAAFDSQLP 173          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 52/167 (31.14%), Postives = 70/167 (41.92%), Query Frame = 1
Query:   67 PFPSRASDPDPLQDVCIADLNA--PISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVF----GFPAVNTQGVSLFRLDLDV-GGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            P  +   DPD +QD C+ D     P+ +   P  P  +                   F     F  V      FP ++T G+S  R DL   GG+NPPH HPR TE  +                 F+KVL  G V + PRA+VH    + +T PAT    FN++NP
Sbjct:   17 PAMAARGDPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDSGGRLFAKVLEQGEVMVFPRAMVHFQLNVGDT-PATVYGAFNSENP 182          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 52/158 (32.91%), Postives = 70/158 (44.30%), Query Frame = 1
Query:   82 ASDPDPLQDVCIADLNAPISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTE--AGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            ASDP  LQD C+AD  + + +NGF CK PA+                       AVT  +V     +NT G+SL R+D    G+NPPH HPR TE    +                 F+KVL  G VF+ P+ L+H       T     +   ++QNP
Sbjct:   21 ASDPSQLQDFCVADKMSQVLVNGFACKDPAAITVEDFFFSGLHMAGNTSNRQGSAVTGVNVAQISGLNTLGISLARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFN-YGTKDVIALAALSSQNP 177          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.443e-13
Identity = 54/162 (33.33%), Postives = 72/162 (44.44%), Query Frame = 1
Query:   76 SRASDPDPLQDVCIA--DLNAPISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQN 543
            + A+DP PLQD C+A  DL   + +NG  CK P                       K  VT  +V   P +NT G+SL R+D    G NPPHTHPR TE  +                    F+KVL PG VF+ P  ++H    + +T PA      ++QN
Sbjct:   20 AEANDPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKT-PAVAFAGLSSQN 180          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 51/160 (31.87%), Postives = 69/160 (43.12%), Query Frame = 1
Query:   82 ASDPDPLQDVCIAD-LNAPISINGF----PCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            ASDPDP+QD CI   + +P   + F    PCK +S V                     A        FP +NT G+S  R DL  G INPPH HPR TE                    ++KV+  G + + P+ LVH    + + + AT +   N+QNP
Sbjct:   24 ASDPDPIQDFCIPKPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGLKTAGNFTETGFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDSNNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVT-ATIVGGLNSQNP 182          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 51/164 (31.10%), Postives = 70/164 (42.68%), Query Frame = 1
Query:   82 ASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGF-------PAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI--XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            A DP+PLQD C+AD  + + +NG PCK  + V                    R  T    +GF       P +NT G S  R+D+  GG+ PPH HPR +E  +                    +KVL  G VF +P+ LVH       + PA      ++QNP
Sbjct:   28 AFDPNPLQDFCVADPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGG--GRGATASRRYGFTARSVDIPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHF-LHNNGSEPAALYASLSSQNP 188          
The following BLAST results are available for this feature:
BLAST of CK739825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
GL23_ARATH3.106e-1632.69Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL23_ORYSJ4.056e-1634.18Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL41_ORYSJ1.180e-1534.57Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL38_ORYSJ1.180e-1534.36Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL25_ARATH4.485e-1530.67Probable germin-like protein subfamily 2 member 5 ... [more]
GL24_ORYSJ1.704e-1431.14Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GL21_ORYSJ8.458e-1432.91Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL114_ARATH1.443e-1333.33Germin-like protein subfamily 1 member 14 OS=Arabi... [more]
GL32_ARATH1.884e-1331.88Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GL51_ORYSJ2.461e-1331.10Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6215 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739825 ID=CK739825; Name=CK739825; organism=Citrus sinensis; type=EST; length=547bp
ATGATATCTTCTTCCTCAATGTCACTCTTTGGGCTGCTATGCGGCCTGAT
AGTACTACTGATGCTCCCTTTCCCTTCCCGTGCAAGTGACCCTGACCCTT
TACAAGACGTCTGTATTGCGGATTTGAATGCCCCCATCTCTATCAATGGT
TTCCCCTGCAAACCTGCTTCGAACGTAACTTCTGATGATTTCTTCACGGA
TTTTTCTAAAGATCCGACCACATTTGACGTCTTTAAGCGTGCAGTCACAT
TTGGTGATGTTTTTGGCTTTCCGGCGGTCAATACTCAAGGAGTTTCACTC
TTCCGACTTGACTTGGATGTCGGCGGAATAAACCCGCCTCATACGCATCC
TCGTGGAACTGAGGCTGGTATTGTTACCAGAGGAACGTTGCTCGTAGGTT
TAGTAACAACTAATAATACCTTTTTCTCAAAGGTCTTGACTCCCGGGATG
GTGTTCTTAATTCCTAGAGCACTGGTTCACCTTCCCACTAAAATGTTGGA
AACGAGCCCGGCCACCTTTATACCTATTTTCAATACTCAAAATCCTG
back to top