CK739825

Overview
NameCK739825
Unique NameCK739825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13
Identity = 55/160 (34.38%), Postives = 70/160 (43.75%), Query Frame = 1
Query:   88 DPDPLQDVCIA-DLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA---VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            DP PLQD C+A D  + + +NG  CK    V                    R    VT  +V   P +NT GVSL R+D   GG NPPHTHPR TE  +                    FSKVL PG VF+ P  ++H    +  T+   F  +  +QNP
Sbjct:   26 DPSPLQDFCVAVDDASGVFVNGKFCKDPKYVKAEDFFTSGLNIAGN--TINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGL-GSQNP 182          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.483e-13
Identity = 43/130 (33.08%), Postives = 63/130 (48.46%), Query Frame = 1
Query:   94 DPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKR-AVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVH 480
            +P QD C+ADL A  + +G+PCK  S V                   K  A    ++  FP +NT G+S++ + +  GG N PH+HP  TEAG+                 +SKV+ PG +F+IP  L+H
Sbjct:   38 NPFQDFCVADLQATPTNSGYPCK--SQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTNYTLYSKVIGPGDMFVIPPGLIH 165          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.483e-13
Identity = 55/158 (34.81%), Postives = 67/158 (42.41%), Query Frame = 1
Query:   88 DPDPLQDVCIADLNAP-ISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA-VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            DP+PLQD C+A      + +NG  CK   +V                  F  + VT  DV   P +NT GVSL RLD   GG NPPH HPR TE  +                    F KVL  G VF+ P  L+H    +  T    F   F +QNP
Sbjct:   27 DPNPLQDFCVAASETNRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAG-FGSQNP 183          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 53/162 (32.72%), Postives = 71/162 (43.83%), Query Frame = 1
Query:   76 SRASDPDPLQDVCIA--DLNAPISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQN 543
            + A DP PLQD C+A  DL   + +NG  CK P                       +  VT  +V   P +NT G+SL R+D    G NPPHTHPR TE  +                    F+KVL PG VF+ P  ++H    + +T PA      ++QN
Sbjct:   20 AEAYDPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKT-PAVAFAGLSSQN 180          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 51/158 (32.28%), Postives = 70/158 (44.30%), Query Frame = 1
Query:   88 DPDPLQDVCIADLNAP-ISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAV-TFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            DP PLQD C+A      + +NG  CK    V                 +   A  T  DV   P +NT GV + R D   GG++PPHTHPRG++  +                    F+KVL PG VF+ P+ L+H    + ET+ A  I    +Q+P
Sbjct:   26 DPSPLQDYCVATNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETN-AVVISAGGSQDP 182          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 53/162 (32.72%), Postives = 71/162 (43.83%), Query Frame = 1
Query:   76 SRASDPDPLQDVCIA--DLNAPISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQN 543
            ++A DP PLQD C+A  D    + +NG  CK P                       K  VT  +V   P +NT G+SL R+D    G NPPHTHPR TE  +                    F+KVL PG VF+ P  ++H    + +T PA      ++QN
Sbjct:   19 AKAYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKT-PAVAFAGLSSQN 179          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.595e-12
Identity = 46/159 (28.93%), Postives = 68/159 (42.77%), Query Frame = 1
Query:   85 SDPDPLQDVCIA---DLNAPISINGFPCKPAS--NVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            SDPDPLQD C++     +  I +NG  CK  +  +V                  F   VT       P +NT G+++ RLD    G+ PPH HPR +E  +                 F++ L PG  F+ P+ L+H    +   S A  +   ++QNP
Sbjct:   18 SDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNP 176          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.083e-12
Identity = 48/150 (32.00%), Postives = 65/150 (43.33%), Query Frame = 1
Query:  100 LQDVCIADLNAPISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            +QD C+AD  AP    G+ CK PA                    +FK AVT      FP VN  G+SL RLDL  GG+ P HTHP  +E  +                 + K L  G + + P+ L+H      +T PA   P F++ +P
Sbjct:   20 VQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDT-PAIAFPSFSSPSP 168          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 53/162 (32.72%), Postives = 68/162 (41.98%), Query Frame = 1
Query:   82 ASDPDPLQDVCIADLNAPIS---INGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI--XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            ASDP PLQD CI  +N P +   +NG  CK    V                        VT  +V   P +NT G+SL R+D  + G NPPHTHPR TE  +                   F+K L  G VF+ P  L+H     +   PA      ++QNP
Sbjct:   24 ASDPSPLQDFCIG-VNTPANALFVNGKFCKDPKLVTADDFYFSGLDKARTTESSPVGSNVTTVNVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFPENRLFNKTLNKGDVFVFPEGLIHFQVN-IGKQPAVAFASLSSQNP 183          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.721e-12
Identity = 50/150 (33.33%), Postives = 66/150 (44.00%), Query Frame = 1
Query:  100 LQDVCIADLNAPISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            +QD C+ADL AP    GF CK PAS                   + K AVT   V  FP VN  G+S+ RLDL VGG+ P HTHP  +E  I                 + + L  G + + P+ L+H      E +PA     F + +P
Sbjct:   25 VQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGE-APALAFASFGSASP 173          
The following BLAST results are available for this feature:
BLAST of CK739825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
GL17_ARATH4.198e-1334.38Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GLT3_ARATH5.483e-1333.08Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL16_ARATH5.483e-1334.81Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL113_ARATH7.160e-1332.72Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL14_ARATH1.221e-1232.28Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL115_ARATH1.221e-1232.72Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL11_ARATH1.595e-1228.93Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
AB19B_PRUPE2.083e-1232.00Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
GL112_ARATH2.721e-1232.72Putative germin-like protein subfamily 1 member 12... [more]
ABP20_PRUPE2.721e-1233.33Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6215 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739825 ID=CK739825; Name=CK739825; organism=Citrus sinensis; type=EST; length=547bp
ATGATATCTTCTTCCTCAATGTCACTCTTTGGGCTGCTATGCGGCCTGAT
AGTACTACTGATGCTCCCTTTCCCTTCCCGTGCAAGTGACCCTGACCCTT
TACAAGACGTCTGTATTGCGGATTTGAATGCCCCCATCTCTATCAATGGT
TTCCCCTGCAAACCTGCTTCGAACGTAACTTCTGATGATTTCTTCACGGA
TTTTTCTAAAGATCCGACCACATTTGACGTCTTTAAGCGTGCAGTCACAT
TTGGTGATGTTTTTGGCTTTCCGGCGGTCAATACTCAAGGAGTTTCACTC
TTCCGACTTGACTTGGATGTCGGCGGAATAAACCCGCCTCATACGCATCC
TCGTGGAACTGAGGCTGGTATTGTTACCAGAGGAACGTTGCTCGTAGGTT
TAGTAACAACTAATAATACCTTTTTCTCAAAGGTCTTGACTCCCGGGATG
GTGTTCTTAATTCCTAGAGCACTGGTTCACCTTCCCACTAAAATGTTGGA
AACGAGCCCGGCCACCTTTATACCTATTTTCAATACTCAAAATCCTG
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