CK739825

Overview
NameCK739825
Unique NameCK739825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 45/164 (27.44%), Postives = 69/164 (42.07%), Query Frame = 1
Query:   88 DPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGF-----------PAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            DPD L D C+AD  A  +   F     + +                     A T   ++GF           P  N QG+++ R+DL  GG+ PPH+HPR +EA +                 ++++L  G  F+ PRA+VH    M   +PA  +   N+Q+P
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAAT---LYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSP 183          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 52/162 (32.10%), Postives = 71/162 (43.83%), Query Frame = 1
Query:   76 SRASDPDPLQDVCIA--DLNAPISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQN 543
            ++A DP PLQD C+A  D    + +NG  CK P                       +  VT  +V   P +NT G+SL R+D    G NPPHTHPR TE  +                    F+KVL PG VF+ P  ++H    + +T PA      ++QN
Sbjct:   19 AKAYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKT-PAVAFAGLSSQN 179          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.554e-12
Identity = 52/162 (32.10%), Postives = 71/162 (43.83%), Query Frame = 1
Query:   76 SRASDPDPLQDVCIA--DLNAPISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQN 543
            ++A DP PLQD C+A  D    + +NG  CK P                       +  VT  +V   P +NT G+SL R+D    G NPPHTHPR TE  +                    F+KVL PG VF+ P  ++H    + +T PA      ++QN
Sbjct:   19 AKAYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKT-PAVAFAGLSSQN 179          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 51/168 (30.36%), Postives = 69/168 (41.07%), Query Frame = 1
Query:   70 FPSRASDPDPLQDVCIADLNAP---ISINGFPCKPASNVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEA-----GIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            + + A+DP  LQD C+  +N P   + +NG  CK    V                      A T       P +NT G+S+ RLD    G+NPPHTHPR TE      G                  F+KVL  G VF+ P+ L+H     +   P   I   ++QNP
Sbjct:   18 YQAYATDPTQLQDFCVG-VNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLN-IGNYPGVGISGLSSQNP 183          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 51/160 (31.87%), Postives = 67/160 (41.88%), Query Frame = 1
Query:   82 ASDPDPLQDVCIADLNAP--ISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI--XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            ASDP  LQD C++   +   + +NG  CK P                          VT  +V     +NT G+SL R+D  V G NPPHTHPR TE  +                   FSKVL  G VF+ P  L+H     +  +PA      ++QNP
Sbjct:   24 ASDPSQLQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNPDNRLFSKVLNEGDVFVFPEGLIHFQAN-IGKAPAVAFAALSSQNP 182          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 47/150 (31.33%), Postives = 63/150 (42.00%), Query Frame = 1
Query:  100 LQDVCIADLNAPISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            +QD C+AD  AP    G+ CK PA                    + K AVT      FP VN  G+SL RLDL  GG+ P HTHP  +E  +                 + K L  G + + P+ L+H       T PA   P F++ +P
Sbjct:   20 VQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGT-PALAFPSFSSPSP 168          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 44/151 (29.14%), Postives = 65/151 (43.05%), Query Frame = 1
Query:   94 DPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            D +QD C+A+L    +  G+PC    +V                 +   AVT G V  FPA+N  G+S  RLDL   G+ P HTHP  +E                    + + L PG V + P+ L+H      +T PA  +  F++ +P
Sbjct:   17 DSVQDFCVANLKRAETPAGYPCIRPIHVKASDFVFSLGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISSANSVYVQTLKPGQVMVFPQGLLHFQINAGKT-PAAALVTFSSASP 166          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 53/163 (32.52%), Postives = 70/163 (42.94%), Query Frame = 1
Query:   76 SRASDPDPLQDVCIADLNAP---ISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA-VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEA--GIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            S+ASDP  LQD C+  +N P   + +NG  CK    V                     + VT  +V   P +NT G+SL R+D  V G NPPHTHPR +E                      FSK L  G VF+ P+ L+H     +   PA      ++QNP
Sbjct:   20 SKASDPSSLQDFCVG-VNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVNNLPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVN-VGKYPAVAFAGLSSQNP 180          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 49/158 (31.01%), Postives = 68/158 (43.04%), Query Frame = 1
Query:   88 DPDPLQDVCIADLNAP-ISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA-VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            +P PLQD C+A      + +NG  CK    V                       +T  DV   P +NT GV + R+D   GG+ PPHTHPRG+E  +                    F+KVL PG VF+ P+ L+     + +T+ A  I    +QNP
Sbjct:   26 EPSPLQDYCVATNETNGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTN-AVVIAATGSQNP 182          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.008e-11
Identity = 50/160 (31.25%), Postives = 68/160 (42.50%), Query Frame = 1
Query:   82 ASDPDPLQDVCIADLNAP--ISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI--XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            ASDP  LQD C++  ++   + +NG  CK P                          VT  +V     +NT G+SL R+D  V G NPPHTHPR TE  +                   F+KVL  G VF+ P  L+H     +  +PA      ++QNP
Sbjct:   24 ASDPSQLQDFCVSANSSANGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQAN-IGKAPAVAFAALSSQNP 182          
The following BLAST results are available for this feature:
BLAST of CK739825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
GL31_ORYSJ3.554e-1227.44Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL119_ARATH3.554e-1232.10Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL117_ARATH3.554e-1232.10Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GLP1_MESCR7.917e-1230.36Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL111_ARATH1.350e-1131.88Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
AB19A_PRUPE1.764e-1131.33Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GLP1_BRANA2.303e-1129.14Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL19_ARATH2.303e-1132.52Putative germin-like protein subfamily 1 member 9 ... [more]
GL15_ARATH2.303e-1131.01Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL110_ARATH3.008e-1131.25Germin-like protein subfamily 1 member 10 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6215 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739825 ID=CK739825; Name=CK739825; organism=Citrus sinensis; type=EST; length=547bp
ATGATATCTTCTTCCTCAATGTCACTCTTTGGGCTGCTATGCGGCCTGAT
AGTACTACTGATGCTCCCTTTCCCTTCCCGTGCAAGTGACCCTGACCCTT
TACAAGACGTCTGTATTGCGGATTTGAATGCCCCCATCTCTATCAATGGT
TTCCCCTGCAAACCTGCTTCGAACGTAACTTCTGATGATTTCTTCACGGA
TTTTTCTAAAGATCCGACCACATTTGACGTCTTTAAGCGTGCAGTCACAT
TTGGTGATGTTTTTGGCTTTCCGGCGGTCAATACTCAAGGAGTTTCACTC
TTCCGACTTGACTTGGATGTCGGCGGAATAAACCCGCCTCATACGCATCC
TCGTGGAACTGAGGCTGGTATTGTTACCAGAGGAACGTTGCTCGTAGGTT
TAGTAACAACTAATAATACCTTTTTCTCAAAGGTCTTGACTCCCGGGATG
GTGTTCTTAATTCCTAGAGCACTGGTTCACCTTCCCACTAAAATGTTGGA
AACGAGCCCGGCCACCTTTATACCTATTTTCAATACTCAAAATCCTG
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