CK739825

Overview
NameCK739825
Unique NameCK739825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 52/160 (32.50%), Postives = 69/160 (43.12%), Query Frame = 1
Query:   82 ASDPDPLQDVCIA--DLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQN 543
            A DP PLQD C+A  DL   + +NG  CK    V                       VT  +V   P +NT G+SL R+D    G NPPHTHPRG+E  +                    F+KVL PG VF+ P  ++H    + +  PA      ++QN
Sbjct:   22 AYDPSPLQDFCVAIDDLKG-VFVNGRFCKDPKRVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKI-PAVAFAGLSSQN 179          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 52/160 (32.50%), Postives = 69/160 (43.12%), Query Frame = 1
Query:   82 ASDPDPLQDVCIA--DLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQN 543
            A DP PLQD C+A  DL   + +NG  CK    V                       VT  +V   P +NT G+SL R+D    G NPPHTHPRG+E  +                    F+KVL PG VF+ P  ++H    + +  PA      ++QN
Sbjct:   22 AYDPSPLQDFCVAIDDLKG-VFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKI-PAVAFAGLSSQN 179          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 48/161 (29.81%), Postives = 65/161 (40.37%), Query Frame = 1
Query:   73 PSRASDPDPLQDVC--IADLNAPISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            P   SD  PLQDVC         + +NGF CK P++ +                 + + +        FP +NT G+S+ R D+ V G   PH+HPR +E                    F K L  G VF+ PR LVH          AT   + N+QNP
Sbjct:   19 PEIISDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGDVFIFPRGLVHF-IMNYGFGLATTFSVLNSQNP 178          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 52/161 (32.30%), Postives = 67/161 (41.61%), Query Frame = 1
Query:   82 ASDPDPLQDVCIADLNAP---ISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQN 543
            ASDP PLQD C+  +N P   + +NG  CK P                          VT  +V     +NT G+SL R+D    G NPPHTHPR TE  +                    F+K L  G VF+ P  L+H     L  +PA  I   ++QN
Sbjct:   24 ASDPSPLQDFCVG-VNTPADGVFVNGKFCKDPRIVFADDFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFN-LGGTPAVAIAALSSQN 182          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 48/139 (34.53%), Postives = 61/139 (43.88%), Query Frame = 1
Query:   82 ASDPDPLQDVCIA--DLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVH 480
            A DP PLQD C+A  DL   + +NG  CK    V                       VT  +V   P +NT G+SL R+D    G NPPHTHPRG+E  +                    F+KVL PG VF+ P  ++H
Sbjct:   22 AYDPSPLQDFCVAIDDLKG-VFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIH 159          
The following BLAST results are available for this feature:
BLAST of CK739825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
GL120_ARATH5.131e-1132.50Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL118_ARATH5.131e-1132.50Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL111_ORYSJ5.131e-1129.81Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL18_ARATH6.702e-1132.30Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL116_ARATH6.702e-1134.53Germin-like protein subfamily 1 member 16 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6215 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739825 ID=CK739825; Name=CK739825; organism=Citrus sinensis; type=EST; length=547bp
ATGATATCTTCTTCCTCAATGTCACTCTTTGGGCTGCTATGCGGCCTGAT
AGTACTACTGATGCTCCCTTTCCCTTCCCGTGCAAGTGACCCTGACCCTT
TACAAGACGTCTGTATTGCGGATTTGAATGCCCCCATCTCTATCAATGGT
TTCCCCTGCAAACCTGCTTCGAACGTAACTTCTGATGATTTCTTCACGGA
TTTTTCTAAAGATCCGACCACATTTGACGTCTTTAAGCGTGCAGTCACAT
TTGGTGATGTTTTTGGCTTTCCGGCGGTCAATACTCAAGGAGTTTCACTC
TTCCGACTTGACTTGGATGTCGGCGGAATAAACCCGCCTCATACGCATCC
TCGTGGAACTGAGGCTGGTATTGTTACCAGAGGAACGTTGCTCGTAGGTT
TAGTAACAACTAATAATACCTTTTTCTCAAAGGTCTTGACTCCCGGGATG
GTGTTCTTAATTCCTAGAGCACTGGTTCACCTTCCCACTAAAATGTTGGA
AACGAGCCCGGCCACCTTTATACCTATTTTCAATACTCAAAATCCTG
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