CK739828

Overview
NameCK739828
Unique NameCK739828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_MOUSE (Mitochondrial import inner membrane translocase subunit Tim10 OS=Mus musculus GN=Timm10 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:  161 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 340
            AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct:   11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70
[Close]
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_HUMAN (Mitochondrial import inner membrane translocase subunit Tim10 OS=Homo sapiens GN=TIMM10 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:  161 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 340
            AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct:   11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70
[Close]
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_BOVIN (Mitochondrial import inner membrane translocase subunit Tim10 OS=Bos taurus GN=TIMM10 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:  161 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 340
            AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct:   11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70
The following BLAST results are available for this feature:
BLAST of CK739828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TIM10_MOUSE7.568e-1145.00Mitochondrial import inner membrane translocase su... [more]
TIM10_HUMAN7.568e-1145.00Mitochondrial import inner membrane translocase su... [more]
TIM10_BOVIN7.568e-1145.00Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6218 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739828 ID=CK739828; Name=CK739828; organism=Citrus sinensis; type=EST; length=515bp
CTCGTATATATTGAAACTAAAACTAGGGATTTTCTCTCTGCTTCATCTTG
TGATCCGATTTACGAACCTAATTGACGGTACCCCAATAGTTAATTTCTCA
AAAGTTGTAATGGCTGCCAATAATCCAATGGGTGTCGATAAAGAACAAGC
ATTTGGTATGGCGGAAACAGAAATGGAGTACAGGGTAGAATTGTTTAACA
GGCTCGCCCAGACATGTTTTAATAAGTGTGTCGACAAAAGGTACAAAGAA
TCCGAGCTAAATATGGGTGAAAATAGTTGCATTGATCGTTGTGTTTCAAA
GTATTGGCAGGTTAATAGTATGATTGGCCAGCTGCTCAGTGCCGGTGGCC
GGCCTCCCATGTAAAATTTAGGGATTCTCCAGTTTGAAGTTTGTTTGAAC
CTCAGCATACCAGGCCTGCTGTTAGTCGAAAGTGGAGACTGATGTTGATC
TTGGGATTGTTTCTATGCGTCTTGTATCGATAATTTCTAGTCTTCTGATC
TAAACAAAGGAATCA
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