CK739836

Overview
NameCK739836
Unique NameCK739836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.553e-50
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  169 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.553e-50
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  173 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.558e-50
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  170 GAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.558e-50
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADD EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  167 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.118e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   20 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.118e-49
Identity = 90/97 (92.78%), Postives = 96/97 (98.97%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADD +AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  182 GAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.118e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEVTDP+YPGGSFDPL LADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  149 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.460e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  169 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.460e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  169 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.460e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  169 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of CK739836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_TOBAC6.553e-5095.88Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_PEA6.553e-5095.88Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB24_PETSP8.558e-5095.88Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_SOYBN8.558e-5095.88Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB2D_SOLLC1.118e-4995.88Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2A_PINSY1.118e-4992.78Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_SOYBN1.118e-4995.88Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2C_SOLLC1.460e-4995.88Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC1.460e-4995.88Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC1.460e-4995.88Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6226 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739836 ID=CK739836; Name=CK739836; organism=Citrus sinensis; type=EST; length=429bp
GGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGA
CTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGAT
GACCGGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAG
GTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCG
GCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAAT
AACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTC
GGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCT
GTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATG
CTTCAATTTGATCTTGTTCTGCTTAAAAA
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