CK739836

Overview
NameCK739836
Unique NameCK739836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.460e-49
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  172 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.460e-49
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  170 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.907e-49
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  171 GAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.907e-49
Identity = 92/96 (95.83%), Postives = 94/96 (97.92%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 289
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  166 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.490e-49
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  171 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.490e-49
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  171 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.490e-49
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  171 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.490e-49
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD EAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  170 GAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.547e-49
Identity = 88/97 (90.72%), Postives = 96/97 (98.97%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADD +AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  182 GAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.547e-49
Identity = 89/97 (91.75%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADD EAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  169 GAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of CK739836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB28_PEA1.460e-4994.85Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_TOBAC1.460e-4994.85Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB23_PETSP1.907e-4994.85Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_MAIZE1.907e-4995.83Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC2.490e-4994.85Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.490e-4994.85Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL2.490e-4995.88Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PETSP2.490e-4994.85Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2A_PYRPY5.547e-4990.72Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE5.547e-4991.75Chlorophyll a-b binding protein M9, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6226 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739836 ID=CK739836; Name=CK739836; organism=Citrus sinensis; type=EST; length=429bp
GGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGA
CTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGAT
GACCGGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAG
GTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCG
GCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAAT
AACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTC
GGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCT
GTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATG
CTTCAATTTGATCTTGTTCTGCTTAAAAA
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