CK739836 | Citrus Genome Database

Overview


Name	CK739836
Unique Name	CK739836
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	429

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.547e-49
Identity = 91/97 (93.81%), Postives = 94/97 (96.91%), Query Frame = 2

Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+D EAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  171 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.547e-49
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 2

Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  171 GAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.108e-48
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 2

Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+D EAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  170 GAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

[Close]

BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.596e-48
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 2

Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADD EAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  169 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 6.133e-48
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 2

Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADD EA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  160 GAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256

[Close]

BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.046e-47
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 2

Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+  EAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  132 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228

[Close]

BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.366e-47
Identity = 88/97 (90.72%), Postives = 93/97 (95.88%), Query Frame = 2

Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AGGPLGE+ DPLYPGGSFDPLGLA+D E  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  168 GAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

[Close]

BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 3.044e-47
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 2

Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADD EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  169 GAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265

[Close]

BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.157e-46
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 2

Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AGGPLG V DPLYPGGSFDPLGLA+D EAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  171 GAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267

[Close]

BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.577e-46
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 2

Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+  +AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  170 GAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266

The following BLAST results are available for this feature:

BLAST of CK739836 vs. ExPASy Swiss-Prot

BLAST of CK739836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77


Match Name	E-value	Identity	Description
CB25_TOBAC	5.547e-49	93.81	Chlorophyll a-b binding protein 50, chloroplastic ...	[more]
CB23_NICPL	5.547e-49	94.85	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB25_NICPL	2.108e-48	92.78	Chlorophyll a-b binding protein E, chloroplastic O...	[more]
CB22_MAIZE	3.596e-48	92.78	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB22_SOYBN	6.133e-48	92.78	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_PEA	1.046e-47	92.78	Chlorophyll a-b binding protein AB96 (Fragment) OS...	[more]
CB23_APIGR	1.366e-47	90.72	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_POLMU	3.044e-47	89.69	Chlorophyll a-b binding protein type 1 member F3, ...	[more]
CB22_PETSP	1.157e-46	89.69	Chlorophyll a-b binding protein 22L, chloroplastic...	[more]
CB21_WHEAT	2.577e-46	89.69	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6226 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60F04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739836 ID=CK739836; Name=CK739836; organism=Citrus sinensis; type=EST; length=429bp
GGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGA
CTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGAT
GACCGGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAG
GTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCG
GCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAAT
AACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTC
GGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCT
GTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATG
CTTCAATTTGATCTTGTTCTGCTTAAAAA