CK739836

Overview
NameCK739836
Unique NameCK739836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.395e-46
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            G +EGYR+ GGPLGE  DPLYPGG+FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  168 GLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.741e-46
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 2
Query:    2 GAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AG GPLGE  D LYPGGSFDPLGLA D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  169 GAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.498e-46
Identity = 87/97 (89.69%), Postives = 89/97 (91.75%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGY +AGG LGEV DPLY GGSFDPLGL DD E FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  168 GAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.670e-45
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 2
Query:    2 GAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AG GPLGE  D LYPGGSFDPLGLA D EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  170 GAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 1.670e-45
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            G VEGYR+ GGPLGE  DP+YPGG+FDPLGLADD +AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  169 GFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.670e-45
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 2
Query:    2 GAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            GAVEGYR+AG GPLGE  D LYPGGSFDPLGLA D EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  170 GAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.860e-45
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            G VEGYR+ GGPLGE  D +YPGG+FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  141 GFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.083e-44
Identity = 85/96 (88.54%), Postives = 88/96 (91.67%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 289
            GAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADD + FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  172 GAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.414e-44
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            G +EGYR+ GGPLGE  D +YPGG+FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  169 GLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.412e-44
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 292
            G VEGYR+ GGPLGE  D +YPGG+FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  169 GFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of CK739836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB21_LEMGI4.395e-4687.63Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SINAL5.741e-4691.84Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB48_MAIZE7.498e-4689.69Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_ARATH1.670e-4589.80Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_GOSHI1.670e-4587.63Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_ARATH1.670e-4589.80Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB25_SOLLC4.860e-4586.60Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2_PHYPA1.083e-4488.54Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC1.414e-4485.57Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB24_SOLLC2.412e-4485.57Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6226 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739836 ID=CK739836; Name=CK739836; organism=Citrus sinensis; type=EST; length=429bp
GGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGA
CTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGAT
GACCGGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAG
GTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCG
GCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAAT
AACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTC
GGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCT
GTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATG
CTTCAATTTGATCTTGTTCTGCTTAAAAA
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