CK739836

Overview
NameCK739836
Unique NameCK739836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.309e-37
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 289
            GAVEGYRIA GPLGEVTDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  173 GAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.673e-35
Identity = 78/98 (79.59%), Postives = 81/98 (82.65%), Query Frame = 2
Query:    2 GAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 289
            G VEG+RI G P +GE  D LYPGG  FDPLGLADD   FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  168 GLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.041e-34
Identity = 76/98 (77.55%), Postives = 79/98 (80.61%), Query Frame = 2
Query:    2 GAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 289
            G VEG+RI G   +GE  D LYPGG  FDPLGLADD   FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  171 GLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.162e-32
Identity = 69/98 (70.41%), Postives = 74/98 (75.51%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 289
            G  E YR  GG  G  +  D LYPGG FDPLGLADD + FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  155 GLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.268e-26
Identity = 63/99 (63.64%), Postives = 68/99 (68.69%), Query Frame = 2
Query:    2 GAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 286
            GAVEGYR    A G  GE  D LYPGG FDPLGLADD + F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   23 GAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.729e-24
Identity = 56/85 (65.88%), Postives = 63/85 (74.12%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 256
            G  E YRI  G   +  D L+PGG FDPLGLA D E  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  183 GGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.894e-21
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 2
Query:   38 LGEVTDPLYPGGS-FDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 256
            LG   DP YPGG  F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.580e-19
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 2
Query:   53 DPLYPGGSF-DPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 256
            +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 2
Query:   62 YPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 256
            YPGG+FDPLG + D   F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   62 YPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 256
            YPGG+FDPLG + D   F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of CK739836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2_MALDO8.309e-3782.29Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC2.673e-3579.59Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU5.041e-3477.55Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE6.162e-3270.41Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_EUGGR2.268e-2663.64Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_ARATH4.729e-2465.88Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC4.894e-2163.51Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA4.580e-1959.42Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU7.313e-1765.15Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC7.313e-1765.15Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6226 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739836 ID=CK739836; Name=CK739836; organism=Citrus sinensis; type=EST; length=429bp
GGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGA
CTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGAT
GACCGGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAG
GTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCG
GCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAAT
AACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTC
GGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCT
GTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATG
CTTCAATTTGATCTTGTTCTGCTTAAAAA
back to top