CK739836
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 8.309e-37 Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 2 Query: 2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 289 GAVEGYRIA GPLGEVTDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K LENLADHL VNNNA + TNFVPG Sbjct: 173 GAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.673e-35 Identity = 78/98 (79.59%), Postives = 81/98 (82.65%), Query Frame = 2 Query: 2 GAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 289 G VEG+RI G P +GE D LYPGG FDPLGLADD FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG Sbjct: 168 GLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 5.041e-34 Identity = 76/98 (77.55%), Postives = 79/98 (80.61%), Query Frame = 2 Query: 2 GAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 289 G VEG+RI G +GE D LYPGG FDPLGLADD FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG Sbjct: 171 GLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 6.162e-32 Identity = 69/98 (70.41%), Postives = 74/98 (75.51%), Query Frame = 2 Query: 2 GAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 289 G E YR GG G + D LYPGG FDPLGLADD + FAELKVKEIKNGRLAMFS GFFVQAIVTGKGP++NL DHLADP N A+A AT F PG Sbjct: 155 GLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.268e-26 Identity = 63/99 (63.64%), Postives = 68/99 (68.69%), Query Frame = 2 Query: 2 GAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 286 GAVEGYR A G GE D LYPGG FDPLGLADD + F ELKVKEIKNGRLAM M GF+ QAIVTG+GP+EN HL DP +N A T F P Sbjct: 23 GAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 4.729e-24 Identity = 56/85 (65.88%), Postives = 63/85 (74.12%), Query Frame = 2 Query: 2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 256 G E YRI G + D L+PGG FDPLGLA D E A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN Sbjct: 183 GGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.894e-21 Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 2 Query: 38 LGEVTDPLYPGGS-FDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 256 LG DP YPGG F+PLG D ++ ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN Sbjct: 192 LGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.580e-19 Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 2 Query: 53 DPLYPGGSF-DPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 256 +P YPGG F +PLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN Sbjct: 199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17 Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 2 Query: 62 YPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 256 YPGG+FDPLG + D F ELK+KEIKNGRLAM + GF V Q+ G GPLENLA HLADP +NN Sbjct: 167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.313e-17 Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 2 Query: 62 YPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 256 YPGG+FDPLG + D F ELKVKEIKNGRLA+ ++ GF V Q+ G GPLENLA HLADP +NN Sbjct: 168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233 The following BLAST results are available for this feature:
BLAST of CK739836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739836 ID=CK739836; Name=CK739836; organism=Citrus sinensis; type=EST; length=429bpback to top |