CK739836

Overview
NameCK739836
Unique NameCK739836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.939e-15
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   59 LYPGGSF-DPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250
            LYPGG F DPLGLA D E  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  216 LYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.794e-14
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   59 LYPGGSF-DPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250
            LYPGG F DPLGLA D    A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++
Sbjct:  213 LYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.876e-13
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   35 PLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253
            P GEV    YPGG F+PL  A  +EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HL+DP +N
Sbjct:  179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.093e-12
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 2
Query:   35 PLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253
            P GEV    YPGG F+PL  A   EA    K KEI NGRLAM +  GF +Q  VTGKGP +NL  H++DP +N
Sbjct:  178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.208e-11
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 2
Query:   50 TDPLYPGGS-FDPLGLADDREA-FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 244
            TD  YPGG  FDPLG      A   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.208e-11
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 2
Query:   50 TDPLYPGGS-FDPLGLADDREA-FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 244
            TD  YPGG  FDPLG      A   EL+ KEIKNGRLAM ++ G + Q I TG GP++NL  HLADP
Sbjct:  192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.061e-11
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 2
Query:    2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAF 115
            GAVEGYR+ GGPLGE  D LYPGG+FDPLGLA+D EAF
Sbjct:  168 GAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
The following BLAST results are available for this feature:
BLAST of CK739836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB4A_ARATH8.939e-1561.54Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH5.794e-1460.00Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_ARATH2.876e-1356.16Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.093e-1253.42Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB12_SOLLC1.208e-1156.72Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.208e-1156.72Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SILPR2.061e-1178.95Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6226 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739836 ID=CK739836; Name=CK739836; organism=Citrus sinensis; type=EST; length=429bp
GGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGA
CTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGAT
GACCGGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAG
GTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCG
GCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAAT
AACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTC
GGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCT
GTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATG
CTTCAATTTGATCTTGTTCTGCTTAAAAA
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