CK739836
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.939e-15 Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 2 Query: 59 LYPGGSF-DPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250 LYPGG F DPLGLA D E A+L++ EIK+ RLAM + GF VQA TGKGPL N A HL+DP++ Sbjct: 216 LYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.794e-14 Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 2 Query: 59 LYPGGSF-DPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250 LYPGG F DPLGLA D A+L++ EIK+ RLAM GF VQA TGKGPL N A HL+DP++ Sbjct: 213 LYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.876e-13 Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 2 Query: 35 PLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253 P GEV YPGG F+PL A +EA K KE+ NGRLAM + GF VQ VTGKGP ENL HL+DP +N Sbjct: 179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.093e-12 Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 2 Query: 35 PLGEVTDPLYPGGSFDPLGLADDREAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253 P GEV YPGG F+PL A EA K KEI NGRLAM + GF +Q VTGKGP +NL H++DP +N Sbjct: 178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.208e-11 Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 2 Query: 50 TDPLYPGGS-FDPLGLADDREA-FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 244 TD YPGG FDPLG A EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.208e-11 Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 2 Query: 50 TDPLYPGGS-FDPLGLADDREA-FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 244 TD YPGG FDPLG A EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 192 TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CK739836 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 2.061e-11 Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 2 Query: 2 GAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDREAF 115 GAVEGYR+ GGPLGE D LYPGG+FDPLGLA+D EAF Sbjct: 168 GAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205 The following BLAST results are available for this feature:
BLAST of CK739836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739836 ID=CK739836; Name=CK739836; organism=Citrus sinensis; type=EST; length=429bpback to top |