CK739846

Overview
NameCK739846
Unique NameCK739846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.024e-20
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E  PK +KSGDAA+V ++PSKPMCVE FT+YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  382 TGKSVENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSV 440          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E +PK +KSGDAA+V +IPSKPMCVE FT+YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  382 TGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAV 440          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K LE +PK VKSGDA +V L+PSKPMCVE++ EYPPLGRFAVRDMRQTVAVG+IKSV
Sbjct:  381 TGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K++E  PKS+KSGDA ++ LIP+KP+CVETFTEYPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E +PK +KSGDAA+V +IPSKPMCVE FT+YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  382 TGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAV 440          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E  PK +KSGDAA+V ++PSKPMCVE FT+YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  382 TGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSV 440          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.949e-20
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE +PK +KSGDAAMV ++ SKPMCVE FT YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  377 KKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSV 433          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.157e-20
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E  PK +KSGDAA+V +IPSKPMCVE+FT++PPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  382 TGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGVIKSV 440          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.736e-20
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PK +KSGDAA+V  +PSKPMCVE F+EYPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  383 KKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.797e-20
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PK VKSGD+A+V +IPSKPMCVE +T+YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  383 KKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAV 439          
The following BLAST results are available for this feature:
BLAST of CK739846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
EF1A_COCIM3.024e-2077.97Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A_SORMA3.949e-2077.97Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_SCHCO3.949e-2077.97Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_ONCVO3.949e-2078.95Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A_NEUCR3.949e-2077.97Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_AJECG3.949e-2077.97Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1AC_PORPU3.949e-2080.70Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_ASPOR5.157e-2077.97Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_YEAST6.736e-2080.70Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_ABSGL8.797e-2078.95Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6236 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739846 ID=CK739846; Name=CK739846; organism=Citrus sinensis; type=EST; length=308bp
GAGAGAGACAGACGTGACATGTAAGGAGCTTGAGCCTACCCCCAAGAGCG
TCAAGTCTGGTGATGCCGCCATGGTCCTCCTCATCCCCTCCAAGCCCATG
TGCGTTGAGACCTTCACTGAATACCCCCCTCTCGGAAGATTTGCAGTCAG
AGACATGCGTCAAACCGTTGCCGTCGGTGTCATCAAGAGTGTCACCAAGA
AGGACAAGAACGCCAAGGCCACCAAGGGTGCCGCCAAGGCTGGCAAGAAG
TAAAAAACTTGCTGTTCAATAAATTATAAAAACGGTTACAACAAAAAAAA
AAAAAAAA
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