CK739846

Overview
NameCK739846
Unique NameCK739846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.797e-20
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PKS+KSGDAA+V ++P KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.797e-20
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PKS+KSGDAA+V ++P KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.797e-20
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PKS+KSGDAA+V ++P KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.797e-20
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PKS+KSGDAA+V ++P KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.797e-20
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PKS+KSGDAA+V ++P KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.149e-19
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K  E  PK++KSGDAA+++L+PSKP+CVE+F E+PPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  383 TGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.501e-19
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K  E  PKS+KSGDAA+V+L P+KPMCVE F E+PPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  383 TGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.501e-19
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K++E +PK VKSGD+A+V ++PSKPMCVE +T+YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  383 KKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.501e-19
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K++E +PK VKSGD+A+V ++PSKPMCVE +T+YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  383 KKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.960e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K  E  PK +KSGD+A+V +IPSKPMCVE FT+YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  382 TGKATESAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAV 440          
The following BLAST results are available for this feature:
BLAST of CK739846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
EF1A2_RAT8.797e-2077.19Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT8.797e-2077.19Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_MOUSE8.797e-2077.19Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A2_HUMAN8.797e-2077.19Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN8.797e-2077.19Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A2_DROME1.149e-1974.58Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_APIME1.501e-1977.97Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A2_RHIRA1.501e-1975.44Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA1.501e-1975.44Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_TRIRE1.960e-1976.27Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6236 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739846 ID=CK739846; Name=CK739846; organism=Citrus sinensis; type=EST; length=308bp
GAGAGAGACAGACGTGACATGTAAGGAGCTTGAGCCTACCCCCAAGAGCG
TCAAGTCTGGTGATGCCGCCATGGTCCTCCTCATCCCCTCCAAGCCCATG
TGCGTTGAGACCTTCACTGAATACCCCCCTCTCGGAAGATTTGCAGTCAG
AGACATGCGTCAAACCGTTGCCGTCGGTGTCATCAAGAGTGTCACCAAGA
AGGACAAGAACGCCAAGGCCACCAAGGGTGCCGCCAAGGCTGGCAAGAAG
TAAAAAACTTGCTGTTCAATAAATTATAAAAACGGTTACAACAAAAAAAA
AAAAAAAA
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