CK739846

Overview
NameCK739846
Unique NameCK739846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.366e-19
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PK +KSGDAA+V +IP KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.702e-19
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KELE  PK +K+GDA MV ++P+KPM VETF++YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  373 KELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSV 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.702e-19
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PK +KSGDAA+V +IP KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK V
Sbjct:  385 KKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.447e-19
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KE+E  PK +K+GDA MV +IP+KPM VETF+EYPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  373 KEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.447e-19
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KELE  PK +K+GDA MV +IP+KPM VETF EYPPLGRFAVRDMRQTVAVGV+K+V
Sbjct:  373 KELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNV 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.447e-19
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PK +KSGDAA+V +IP KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.727e-19
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K LE  PK VKSGDA +V ++PSK MCVE F +YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  380 TGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSV 438          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.727e-19
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PK +KSGDAA+V ++P KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.727e-19
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PK +KSGDAA+V ++P KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.727e-19
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PK +KSGDAA+V ++P KPMCVE+F++YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAV 441          
The following BLAST results are available for this feature:
BLAST of CK739846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
EF1A0_XENLA4.366e-1977.19Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1A_MAIZE5.702e-1977.19Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A2_XENLA5.702e-1977.19Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_TOBAC7.447e-1977.19Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC7.447e-1977.19Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_CHICK7.447e-1977.19Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A_PUCGR9.727e-1976.27Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A3_HUMAN9.727e-1975.44Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A1_RAT9.727e-1975.44Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT9.727e-1975.44Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6236 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739846 ID=CK739846; Name=CK739846; organism=Citrus sinensis; type=EST; length=308bp
GAGAGAGACAGACGTGACATGTAAGGAGCTTGAGCCTACCCCCAAGAGCG
TCAAGTCTGGTGATGCCGCCATGGTCCTCCTCATCCCCTCCAAGCCCATG
TGCGTTGAGACCTTCACTGAATACCCCCCTCTCGGAAGATTTGCAGTCAG
AGACATGCGTCAAACCGTTGCCGTCGGTGTCATCAAGAGTGTCACCAAGA
AGGACAAGAACGCCAAGGCCACCAAGGGTGCCGCCAAGGCTGGCAAGAAG
TAAAAAACTTGCTGTTCAATAAATTATAAAAACGGTTACAACAAAAAAAA
AAAAAAAA
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