CK739846

Overview
NameCK739846
Unique NameCK739846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.659e-18
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KELE  PK +K+GDA  V +IP+KPM VETF+EYPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  373 KELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.659e-18
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E  PK VKSGDAA+V L+  KP+CVET+ +YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  381 TGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.659e-18
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KELE  PK +K+GDA  V +IP+KPM VETF +YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  373 KELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSV 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.659e-18
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KELE  PK +K+GDA  V +IP+KPM VETF +YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  373 KELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSV 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.167e-18
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K +E  PK VKSGDAA++ LIPSK MCVE+F++YPPLGRFAVRDMRQTVAVGVIK V
Sbjct:  387 KVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEV 443          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.167e-18
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K++E +PK VKSGDA +  ++PSKPMCVE FT+Y PLGRFAVRDMRQTVAVGVIK+V
Sbjct:  383 KKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.167e-18
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K++E +PK VKSGDA +  ++PSKPMCVE FT+Y PLGRFAVRDMRQTVAVGVIK+V
Sbjct:  383 KKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.167e-18
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K  E  PK +KSGDAA+V L+PSKP+CVE F E+PPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.830e-18
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE  PK VKSGDAA+V LIP KPM VE F+ YPPLGRFAVRDMRQTVAVGVIK+V
Sbjct:  385 KKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.830e-18
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K++E  PK +KSGDA +V LIP+KP+CVE+FT+Y PLGRFAVRDMRQTVAVGVIKSV
Sbjct:  383 TGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441          
The following BLAST results are available for this feature:
BLAST of CK739846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
EF1A_SOYBN1.659e-1877.19Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_CRYNE1.659e-1874.58Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A2_HORVU1.659e-1877.19Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU1.659e-1877.19Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_HYDAT2.167e-1877.19Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A2_SCHPO2.167e-1873.68Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A1_SCHPO2.167e-1873.68Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A1_DROME2.167e-1875.44Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_ORYLA2.830e-1878.95Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_CAEEL2.830e-1874.58Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6236 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739846 ID=CK739846; Name=CK739846; organism=Citrus sinensis; type=EST; length=308bp
GAGAGAGACAGACGTGACATGTAAGGAGCTTGAGCCTACCCCCAAGAGCG
TCAAGTCTGGTGATGCCGCCATGGTCCTCCTCATCCCCTCCAAGCCCATG
TGCGTTGAGACCTTCACTGAATACCCCCCTCTCGGAAGATTTGCAGTCAG
AGACATGCGTCAAACCGTTGCCGTCGGTGTCATCAAGAGTGTCACCAAGA
AGGACAAGAACGCCAAGGCCACCAAGGGTGCCGCCAAGGCTGGCAAGAAG
TAAAAAACTTGCTGTTCAATAAATTATAAAAACGGTTACAACAAAAAAAA
AAAAAAAA
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