CK739846

Overview
NameCK739846
Unique NameCK739846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.696e-18
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KELE  PK +K+GDA  V +IP+KPM VETF+ YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  373 KELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSV 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.827e-18
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K LE  PK +K+GDAA++ + PSKPMCVE+F EYPPLGRFAVRDM+QTVAVGVIK V
Sbjct:  270 KALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGV 326          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.827e-18
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KELE  PK +K+GDA  V +IP+KPM VETF  YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  373 KELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSV 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.305e-18
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K LE  PK +KSG+AA+V ++P KPMCVE F +YPPLGRFAVRDM+QTVAVGVIK V
Sbjct:  373 KVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDMKQTVAVGVIKEV 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.234e-18
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K++E  PK +KSGDA +V LIP+KP+CVE FT+Y PLGRFAVRDMRQTVAVGVIK V
Sbjct:  383 TGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.234e-18
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K  E +PK +KSGDA +V LIP+KP CVE+FT+Y PLGRFAVRDMRQTVAVGVIKSV
Sbjct:  384 TGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 442          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.234e-18
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K++E  PK +KSGDA +V LIP+KP+CVE FT+Y PLGRFAVRDMRQTVAVGVIK V
Sbjct:  383 TGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.234e-18
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K++E  PK +KSGDA +V LIP+KP+CVE FT+Y PLGRFAVRDMRQTVAVGVIK V
Sbjct:  383 TGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGV 441          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.075e-17
Identity = 43/57 (75.44%), Postives = 48/57 (84.21%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KELE  PK +K+GDA +V +IP+KPM VETF  YPPLGRFAVRDMRQTVAVGVIK V
Sbjct:  373 KELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGV 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.075e-17
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KELE  PK +K+GDA MV ++P+KPM VETF EYPPLGRFAVR MRQTVAVGVIK+V
Sbjct:  373 KELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAV 429          
The following BLAST results are available for this feature:
BLAST of CK739846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
EF1A_MANES3.696e-1877.19Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_EIMBO4.827e-1873.68Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A2_DAUCA4.827e-1877.19Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_STYLE6.305e-1871.93Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A4_OSCTI8.234e-1872.88Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A3_OSCTI8.234e-1874.58Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A2_OSCTI8.234e-1872.88Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A1_OSCTI8.234e-1872.88Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A_WHEAT1.075e-1775.44Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A1_DAUCA1.075e-1775.44Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6236 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739846 ID=CK739846; Name=CK739846; organism=Citrus sinensis; type=EST; length=308bp
GAGAGAGACAGACGTGACATGTAAGGAGCTTGAGCCTACCCCCAAGAGCG
TCAAGTCTGGTGATGCCGCCATGGTCCTCCTCATCCCCTCCAAGCCCATG
TGCGTTGAGACCTTCACTGAATACCCCCCTCTCGGAAGATTTGCAGTCAG
AGACATGCGTCAAACCGTTGCCGTCGGTGTCATCAAGAGTGTCACCAAGA
AGGACAAGAACGCCAAGGCCACCAAGGGTGCCGCCAAGGCTGGCAAGAAG
TAAAAAACTTGCTGTTCAATAAATTATAAAAACGGTTACAACAAAAAAAA
AAAAAAAA
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