CK739846

Overview
NameCK739846
Unique NameCK739846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.086e-17
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K  E  PK +K+GDAA+V LIP+K +CVE F EYPPLGR+AVRDM+QTVAVGVIK V
Sbjct:  372 TGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKV 430          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.086e-17
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K +E  PK++KSGD+A+V L P KPM VETFTEYPPLGRFA+RDMRQT+AVG+I  +
Sbjct:  371 KVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQL 427          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.337e-17
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 2
Query:   50 VKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKS 190
            +K+GDAAMV L PS+PMCVE+FTEYPPLGRFAVRDMRQTVAVGVIKS
Sbjct:  385 LKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKS 431          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.337e-17
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKS 190
            T K L   P  VK+G + M  L+PSKPMCVETF++YPPLGRFAVRDMRQTVAVG+IKS
Sbjct:  372 TGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.518e-16
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            KELE  PK +KSGDAA+VL+ P KPMCVE+FT+YPPLG  +  DMRQTVAVGVIKSV
Sbjct:  373 KELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSV 428          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.707e-16
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K+LE  P  +KSGDAA++ L P KP CVE F +YPPLGRFA RD++QTVAVGV+KSV
Sbjct:  386 TGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSV 444          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.315e-15
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K  E  PK +K+GDA ++ L PSKP+CVETF  Y PLGRFAVRDMRQTVAVGVI+ +
Sbjct:  373 KMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEI 429          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.825e-15
Identity = 33/51 (64.71%), Postives = 47/51 (92.16%), Query Frame = 2
Query:   41 PKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            P+ +K+GD+A+V ++P+KP+CVE F ++PPLGRFAVRDM+QTVAVGV+K+V
Sbjct:  378 PEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.975e-13
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T KE E  P+ +K G++A+V   P KP+CVE F+++PPLGRFA+RDM +TV VGVI  V
Sbjct:  369 TGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDV 427          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.975e-13
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E  PK +K+G++ +V L+P+KP+CVE F++Y  LGRF +RDM++TVAVGVI+ V
Sbjct:  368 TGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEV 426          
The following BLAST results are available for this feature:
BLAST of CK739846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
EF1A_TETPY4.086e-1769.49Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_PLAFK4.086e-1768.42Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_DICDI5.337e-1787.23Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_BLAHO5.337e-1770.69Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A_EUGGR4.518e-1673.68Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A1_XENLA7.707e-1666.10Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A1_EUPCR1.315e-1566.67Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_ENTHI3.825e-1564.71Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_METS57.975e-1355.93Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A2_EUPCR7.975e-1354.24Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6236 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739846 ID=CK739846; Name=CK739846; organism=Citrus sinensis; type=EST; length=308bp
GAGAGAGACAGACGTGACATGTAAGGAGCTTGAGCCTACCCCCAAGAGCG
TCAAGTCTGGTGATGCCGCCATGGTCCTCCTCATCCCCTCCAAGCCCATG
TGCGTTGAGACCTTCACTGAATACCCCCCTCTCGGAAGATTTGCAGTCAG
AGACATGCGTCAAACCGTTGCCGTCGGTGTCATCAAGAGTGTCACCAAGA
AGGACAAGAACGCCAAGGCCACCAAGGGTGCCGCCAAGGCTGGCAAGAAG
TAAAAAACTTGCTGTTCAATAAATTATAAAAACGGTTACAACAAAAAAAA
AAAAAAAA
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