CK739846

Overview
NameCK739846
Unique NameCK739846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVR 151
            T K  E  PKS+KSGDAA+V L+PSKP+CVE+F E+PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413
[Close]
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVR 151
            T K  E  PKS+KSGDAA+V L+PSKP+CVE+F E+PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413
[Close]
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVR 151
            T K  E  PKS+KSGDAA+V L+PSKP+CVE+F E+PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413
[Close]
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVR 151
            T K  E  PKS+KSGDAA+V L+PSKP+CVE+F E+PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413
[Close]
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVR 151
            T K  E  PKS+KSGDAA+V L+PSKP+CVE+F E+PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413
[Close]
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVR 151
            T K  E  PKS+KSGDAA+V L+PSKP+CVE+F E+PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413
[Close]
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVR 151
            T K  E  PKS+KSGDAA+V L+PSKP+CVE+F E+PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413
[Close]
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVR 151
            T K  E  PKS+KSGDAA+V L+PSKP+CVE+F E+PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413
[Close]
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.320e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVR 151
            T K  E  PKS+KSGDAA+V L+PSKP+CVE+F E+PPLGRFAVR
Sbjct:  369 TGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413
[Close]
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.169e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 2 
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T +E E  P+ +K GD A+V   P KP+CVE + E+PPLGRFA+RDM +TV VG+I  V
Sbjct:  369 TGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV 427
The following BLAST results are available for this feature:
BLAST of CK739846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
EF1A_SPOFR2.320e-1271.11Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE2.320e-1271.11Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI2.320e-1271.11Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL2.320e-1271.11Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI2.320e-1271.11Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM2.320e-1271.11Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL2.320e-1271.11Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF2.320e-1271.11Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE2.320e-1271.11Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_SULSO5.169e-1254.24Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6236 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739846 ID=CK739846; Name=CK739846; organism=Citrus sinensis; type=EST; length=308bp
GAGAGAGACAGACGTGACATGTAAGGAGCTTGAGCCTACCCCCAAGAGCG
TCAAGTCTGGTGATGCCGCCATGGTCCTCCTCATCCCCTCCAAGCCCATG
TGCGTTGAGACCTTCACTGAATACCCCCCTCTCGGAAGATTTGCAGTCAG
AGACATGCGTCAAACCGTTGCCGTCGGTGTCATCAAGAGTGTCACCAAGA
AGGACAAGAACGCCAAGGCCACCAAGGGTGCCGCCAAGGCTGGCAAGAAG
TAAAAAACTTGCTGTTCAATAAATTATAAAAACGGTTACAACAAAAAAAA
AAAAAAAA
back to top