CK739850

Overview
NameCK739850
Unique NameCK739850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1430 contig Csv1_Contig1430:1..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739850 vs. ExPASy Swiss-Prot
Match: Y9851_DICDI (Probable serine/threonine-protein kinase DDB_G0275165 OS=Dictyostelium discoideum GN=DDB_G0275165 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.175e-19
Identity = 54/159 (33.96%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  142 LDHPNVTKFIGASMGTTNLKIPSQSATSDSHNSLPSRACCVVVEYLPGGTLKKFLIRNKRKKLAFKGVIQIALDLARGLSYLHSKKIVHRDVKTENMLLDANRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEI 618
            L HPNV KF G +                       R+  ++ E + GG L  + I+NK   + +K  ++IA D+A  ++YLH   ++HRD+K+ N+L+  N  +K+ D G+AR   ++ +      GT  +MAPEVL G+ Y+  CDV+SFG+ L E+
Sbjct:   78 LSHPNVIKFYGIAE--------------------KERSLFLLTELVSGGDLHWY-IKNKSIDITWKLKVKIARDIAASMAYLHENGVIHRDLKSTNLLVAENWVIKVCDMGLARKMDKSEKSKMTICGTDDWMAPEVLIGEEYDASCDVFSFGMVLIEL 215          
BLAST of CK739850 vs. ExPASy Swiss-Prot
Match: LIMK1_RAT (LIM domain kinase 1 OS=Rattus norvegicus GN=Limk1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.175e-19
Identity = 61/183 (33.33%), Postives = 91/183 (49.73%), Query Frame = 1
Query:  112 FGKRWPVWQKLDHPNVTKFIGASMGTTNLKIPSQSATSDSHNSLPSRACCVVVEYLPGGTLKKFLIRNKRKKLAFKGVIQIALDLARGLSYLHSKKIVHRDVKTENMLLDANRTLKIADFGVARV---EAQNPRDMTG-----------ETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEI 618
            F K   V + L+HPNV KFIG       L                      + EY+ GGTL+  +I++   +  +   +  A D+A G++YLHS  I+HRD+ + N L+  NR + +ADFG+AR+   E     D+               G   +MAPE+++G+ Y+ K DV+SFGI L EI
Sbjct:  381 FLKEVKVMRCLEHPNVLKFIGVLYKDKRLNF--------------------ITEYIKGGTLRG-IIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENRNVVVADFGLARLMIDEKGQSEDLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEI 542          
BLAST of CK739850 vs. ExPASy Swiss-Prot
Match: LIMK1_CHICK (LIM domain kinase 1 OS=Gallus gallus GN=LIMK1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.175e-19
Identity = 60/183 (32.79%), Postives = 91/183 (49.73%), Query Frame = 1
Query:  112 FGKRWPVWQKLDHPNVTKFIGASMGTTNLKIPSQSATSDSHNSLPSRACCVVVEYLPGGTLKKFLIRNKRKKLAFKGVIQIALDLARGLSYLHSKKIVHRDVKTENMLLDANRTLKIADFGVARV---EAQNPRDMTG-----------ETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEI 618
            F K   V + L+HPNV KFIG       L                      + EY+ GGTL+  LI++      +   +  A D+A G++YLHS  I+HRD+ + N L+  N+++ +ADFG+AR+   E   P  +               G   +MAPE+++G+ Y+ K D++SFGI L EI
Sbjct:  388 FLKEVKVMRCLEHPNVLKFIGVLYKEKRLNF--------------------ITEYIKGGTLRG-LIKSMDSHYPWSQRVSFAKDIAAGMAYLHSMNIIHRDLNSHNCLVRENKSVVVADFGLARLMVDEKNQPEHLQNLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDIFSFGIVLCEI 549          
BLAST of CK739850 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.175e-19
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1
Query:  262 VVVEYLPGGTLKKFLIRNKRKKLAFKGVIQIALDLARGLSYLH---SKKIVHRDVKTENMLLDANRTLKIADFGVARV--EAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIYC 624
            ++ EY+  GT+K  L  +    L +K  ++I +  ARGL YLH   SK ++HRDVK+ N+LLD N   K+ADFG+++   E       T   G+ GY+ PE    +    K DVYSFG+ L+E+ C
Sbjct:  556 LIYEYMENGTVKSHLYGSGLPSLTWKQRLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLC 681          
BLAST of CK739850 vs. ExPASy Swiss-Prot
Match: FER_CANFA (Proto-oncogene tyrosine-protein kinase Fer OS=Canis familiaris GN=FER PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.175e-19
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  130 VWQKLDHPNVTKFIGASMGTTNLKIPSQSATSDSHNSLPSRACCVVVEYLPGGTLKKFLIRNKRKKLAFKGVIQIALDLARGLSYLHSKKIVHRDVKTENMLLDANRTLKIADFGVARVEAQNPRDMTG-ETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIY 621
            + ++ DHPN+ K IG       + I                    ++E +PGG    FL R K+ ++  K +++ +LD A G+SYL SK  +HRD+   N L+  N  LKI+DFG++R E       +G +   + + APE L+   Y+ + DV+SFGI LWE +
Sbjct:  611 ILKQYDHPNIVKLIGVCTQRQPIYI--------------------IMELVPGGDFLSFL-RKKKDEIKLKQLVKFSLDAASGMSYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDGGVYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSFGILLWETF 754          
BLAST of CK739850 vs. ExPASy Swiss-Prot
Match: Y9865_DICDI (Probable serine/threonine-protein kinase DDB_G0280461 OS=Dictyostelium discoideum GN=DDB_G0280461 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.453e-19
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  262 VVVEYLPGGTLKKFLIRNKRKKLAFKGVIQIALDLARGLSYLHSKKIVHRDVKTENMLLDANRTLKIADFGVAR-VEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEI 618
            +V E + GG L   L+ +K   + +   ++IA D+A G+ YLHSK+I+HRD+K+ N+LL  N T+KI DFG A+ +  QNP  MT   GT  +M+PEV+ G  Y+   D+YSFG+ L E+
Sbjct:   90 LVTELINGGDLGNILLDHKFH-IPWSLRVKIAKDIAEGMEYLHSKQIMHRDLKSNNLLLGRNWTIKICDFGFAKEITIQNPLSMT-ICGTDEFMSPEVILGIQYSYSADIYSFGMVLLEL 207          
BLAST of CK739850 vs. ExPASy Swiss-Prot
Match: LIMK1_HUMAN (LIM domain kinase 1 OS=Homo sapiens GN=LIMK1 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.453e-19
Identity = 59/183 (32.24%), Postives = 89/183 (48.63%), Query Frame = 1
Query:  112 FGKRWPVWQKLDHPNVTKFIGASMGTTNLKIPSQSATSDSHNSLPSRACCVVVEYLPGGTLKKFLIRNKRKKLAFKGVIQIALDLARGLSYLHSKKIVHRDVKTENMLLDANRTLKIADFGVARVEAQNPRDMTG--------------ETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEI 618
            F K   V + L+HPNV KFIG       L                      + EY+ GGTL+  +I++   +  +   +  A D+A G++YLHS  I+HRD+ + N L+  N+ + +ADFG+AR+         G                G   +MAPE+++G+ Y+ K DV+SFGI L EI
Sbjct:  381 FLKEVKVMRCLEHPNVLKFIGVLYKDKRLNF--------------------ITEYIKGGTLRG-IIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEI 542          
BLAST of CK739850 vs. ExPASy Swiss-Prot
Match: FER_MOUSE (Proto-oncogene tyrosine-protein kinase Fer OS=Mus musculus GN=Fer PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.453e-19
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  130 VWQKLDHPNVTKFIGASMGTTNLKIPSQSATSDSHNSLPSRACCVVVEYLPGGTLKKFLIRNKRKKLAFKGVIQIALDLARGLSYLHSKKIVHRDVKTENMLLDANRTLKIADFGVARVEAQNPRDMTG-ETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIY 621
            + ++ DHPN+ K IG                         +   +++E +PGG    FL R ++ +L  K +++ +LD+A G+ YL SK  +HRD+   N L+  N TLKI+DFG++R E       +G +   + + APE L+   Y+ + DV+SFGI LWE +
Sbjct:  612 ILKQYDHPNIVKLIGVCT--------------------QRQPVYIIMELVPGGDFLTFL-RKRKDELKLKQLVRFSLDVAAGMLYLESKNCIHRDLAARNCLVGENNTLKISDFGMSRQEDGGVYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSFGILLWETF 755          
BLAST of CK739850 vs. ExPASy Swiss-Prot
Match: CRK42_ARATH (Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.453e-19
Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 1
Query:  262 VVVEYLPGGTLKKFLIRNKRKK-LAFKGVIQIALDLARGLSYLHSK---KIVHRDVKTENMLLDANRTLKIADFGVARVEAQNPRDM-TGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIYC 624
            +V EY+P  +L +FL    + K L +   + I L  A GL+YLH     +I+HRD+KT N+LLD     KIADFG+AR    +   + TG  GTLGYMAPE +       K DVYSFG+ + EI C
Sbjct:  386 LVYEYVPNKSLDQFLFDESQSKVLNWSQRLNIILGTAEGLAYLHGGSPVRIIHRDIKTSNVLLDDQLNPKIADFGLARCFGLDKTHLSTGIAGTLGYMAPEYVVRGQLTEKADVYSFGVLVLEIAC 511          
BLAST of CK739850 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.122e-19
Identity = 54/133 (40.60%), Postives = 78/133 (58.65%), Query Frame = 1
Query:  262 VVVEYLPGGTLKKFLI--RNKRKKLAFKGVIQIALDLARGLSYLHS---KKIVHRDVKTENMLLDANRTLKIADFGVAR--VEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIYCCDMPL 639
            +V EYL GG+L   L   R+KR  L +   +++A+D A+GL YLH+    +I+HRDVK+ N+LLD +   K++DFG+++   +A      T   GT GY+ PE         K DVYSFG+ L E+ C   PL
Sbjct:  677 LVYEYLSGGSLADHLYGPRSKRHSLNWVSRLKVAVDAAKGLDYLHNGSEPRIIHRDVKSSNILLDKDMNAKVSDFGLSKQFTKADASHITTVVKGTAGYLDPEYYSTLQLTEKSDVYSFGVVLLELICGREPL 809          
The following BLAST results are available for this feature:
BLAST of CK739850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y9851_DICDI4.175e-1933.96Probable serine/threonine-protein kinase DDB_G0275... [more]
LIMK1_RAT4.175e-1933.33LIM domain kinase 1 OS=Rattus norvegicus GN=Limk1 ... [more]
LIMK1_CHICK4.175e-1932.79LIM domain kinase 1 OS=Gallus gallus GN=LIMK1 PE=1... [more]
HERK_ARATH4.175e-1939.68Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
FER_CANFA4.175e-1933.33Proto-oncogene tyrosine-protein kinase Fer OS=Cani... [more]
Y9865_DICDI5.453e-1944.17Probable serine/threonine-protein kinase DDB_G0280... [more]
LIMK1_HUMAN5.453e-1932.24LIM domain kinase 1 OS=Homo sapiens GN=LIMK1 PE=1 ... [more]
FER_MOUSE5.453e-1932.73Proto-oncogene tyrosine-protein kinase Fer OS=Mus ... [more]
CRK42_ARATH5.453e-1944.44Cysteine-rich receptor-like protein kinase 42 OS=A... [more]
Y5487_ARATH7.122e-1940.60Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6240 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739850 ID=CK739850; Name=CK739850; organism=Citrus sinensis; type=EST; length=639bp
GGACTGTGTACCGCGGCGCATATGATGGCCAAGATGTTGCAGTGAAGATA
TTGGATTGGGCGGAGGATGGGATGGTCACATCTGCTGAAGCTGCTGCAAT
TCGGGCATCATTTCGGCAAGAGGTGGCCTGTTTGGCAAAAGCTTGACCAT
CCAAACGTAACCAAATTTATTGGAGCTTCAATGGGAACAACCAATCTTAA
GATTCCTTCCCAAAGTGCTACGAGTGACAGCCATAATTCTCTTCCTTCCA
GGGCTTGCTGTGTTGTTGTTGAATACCTTCCAGGCGGGACATTGAAGAAA
TTTTTGATCAGGAACAAGAGGAAAAAACTTGCCTTTAAGGGTGTGATTCA
AATTGCTTTGGATCTTGCTAGAGGATTGAGCTATCTTCACTCAAAAAAGA
TTGTACATCGTGATGTTAAGACAGAAAACATGTTGCTAGATGCTAACAGA
ACTTTGAAAATTGCTGATTTTGGTGTTGCTCGAGTTGAAGCTCAGAATCC
AAGGGACATGACTGGGGAAACAGGAACTCTTGGGTACATGGCCCCAGAGG
TACTGGATGGGAAGCCTTACAATAGGAAATGCGATGTCTATAGCTTTGGG
ATATGCCTATGGGAAATCTACTGCTGCGATATGCCTTTA
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